View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_high_5 (Length: 488)
Name: NF5834_high_5
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 37957864 - 37957400
Alignment:
| Q |
20 |
aagtcaaactccaaaaattgtaaaatgttgatatttttccattactctacgttaataatatgtgtcggcttcgttgtcttttgtatatttgctactatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957864 |
aagtcaaactccaaaaattgtaaaatgttgatatttttccattactatacgttaataatatgtgtcggcttcgttgtcttttgtatatttgctactatat |
37957765 |
T |
|
| Q |
120 |
aatataaccaaaa--tcaattggatcgtataaatgtgaatnnnnnnn-gttggtaagctacgtcttcgtcgtcnnnnnnnnnnnnnnnnnnngattcctt |
216 |
Q |
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||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37957764 |
aatataaccaaaaaatcaattgggtcgtataaatgtgaataaaaaaaagttggtaagctacgtcttcgtcgtctttttttgctttttattttgattcctt |
37957665 |
T |
|
| Q |
217 |
gcaatcaaaattgatgtctcattttatgggaatcaatattctctgacagcaaatgattgggaacatatatacgaaacagctagctataatgtaacaaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957664 |
gcaatcaaaattgatgtctcattttatgggaatcaatattctctgacagcaaatgattgggaacatatatacgaaacagctagctataatgtaacaaaat |
37957565 |
T |
|
| Q |
317 |
ctaaaattgaacttcatcatatttcatcaaagtttagtgtgtagagataattaattgaagggcaccagattaattaaccacgtttaaagactaatgacta |
416 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957564 |
ctaaaattggacttcatcatatctcatcaaagtttagtgtgtagagataattaattgaagggcaccagattaattaaccacgtttaaagactaatgacta |
37957465 |
T |
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| Q |
417 |
gcttcaaggtaaaatccttgaacataattctctagttgggtctttgctttaatttgcaccctttg |
481 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37957464 |
gcttcaaggtaaaatccttgaacataattctctagttaggtctttgctttaatttgcaccctttg |
37957400 |
T |
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