View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5834_high_6 (Length: 449)

Name: NF5834_high_6
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5834_high_6
NF5834_high_6
[»] chr3 (8 HSPs)
chr3 (209-439)||(33095925-33096149)
chr3 (17-88)||(33095728-33095804)
chr3 (117-187)||(33095833-33095908)
chr3 (42-88)||(33094755-33094801)
chr3 (293-347)||(40878226-40878280)
chr3 (276-336)||(54923500-54923560)
chr3 (293-347)||(51053649-51053703)
chr3 (315-347)||(31812266-31812298)
[»] chr5 (3 HSPs)
chr5 (276-347)||(22792153-22792224)
chr5 (276-347)||(26526527-26526598)
chr5 (298-347)||(13542847-13542895)
[»] chr4 (6 HSPs)
chr4 (264-347)||(13849357-13849441)
chr4 (276-347)||(22988034-22988105)
chr4 (276-347)||(22717112-22717183)
chr4 (298-347)||(27031857-27031906)
chr4 (300-344)||(15540061-15540105)
chr4 (264-331)||(46343330-46343398)
[»] chr1 (5 HSPs)
chr1 (264-347)||(7204551-7204635)
chr1 (276-331)||(236584-236639)
chr1 (276-331)||(11064322-11064377)
chr1 (293-344)||(40685560-40685611)
chr1 (286-344)||(29511132-29511190)
[»] chr8 (7 HSPs)
chr8 (271-347)||(3728369-3728444)
chr8 (276-331)||(11098133-11098187)
chr8 (293-347)||(4312164-4312218)
chr8 (278-332)||(31291235-31291289)
chr8 (293-347)||(36442337-36442391)
chr8 (293-347)||(43149421-43149474)
chr8 (286-347)||(37817400-37817461)
[»] chr7 (5 HSPs)
chr7 (260-347)||(24333338-24333426)
chr7 (276-347)||(6328217-6328288)
chr7 (42-88)||(15320149-15320195)
chr7 (276-333)||(35289860-35289917)
chr7 (42-86)||(40698538-40698582)
[»] chr2 (2 HSPs)
chr2 (276-347)||(39417457-39417527)
chr2 (310-347)||(22999123-22999160)
[»] scaffold0027 (1 HSPs)
scaffold0027 (264-344)||(19359-19440)
[»] chr6 (1 HSPs)
chr6 (293-346)||(31242034-31242087)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 209 - 439
Target Start/End: Original strand, 33095925 - 33096149
Alignment:
Q  209 tattgtggcttctgatatatgttttcttgttattagagaagagnnnnnnnngtcacataagtccaga-tcaactgacaaaaattacgaatttgttaggtc 307  Q
    ||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||  | ||||||| ||||||| ||||| |||||||| |    
T  33095925 tattgtggcttctaatatatgttttcttgttattagagaagagctttttt-gtcacataagtcctaactcaactggcaaaaatgacgaaattgttaggcc 33096023  T
Q  308 gaacgtcatgactggggttcgaactccgacacctccacttnnnnnnnnnnnnnnnnagtttacgatgacttatgttactcaagtggtagtaagtaaggta 407  Q
    ||||||||||| |||||||| |||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
T  33096024 gaacgtcatgattggggttcaaactccgacacctccactttgtgtgtgtg------agtttacgatgacttatgttactcaagtggtagtaagtaaggta 33096117  T
Q  408 agacactattcaaggaagaaaacatacctatg 439  Q
    ||||||||||||||||||||||||||||||||    
T  33096118 agacactattcaaggaagaaaacatacctatg 33096149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 33095728 - 33095804
Alignment:
Q  17 aagtactatgtttaaatagatataa-----gcttctcattttagactctttataacttgtgttcataaattgcttta 88  Q
    |||||||||||||||||| |||| |     ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33095728 aagtactatgtttaaataaatattaattttgcttctcattttagactctttataaattgtgttcataaattgcttta 33095804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 33095833 - 33095908
Alignment:
Q  117 gtcgtgtcttcgtcctat-----ttacattagcggtgtcacttgttcgagtttgtggttcatagattatattgtat 187  Q
    ||||||||||||||||||     |||||||||||||||  |||||||||||||||| ||||||||||||| |||||    
T  33095833 gtcgtgtcttcgtcctatgttttttacattagcggtgtttcttgttcgagtttgtgcttcatagattatactgtat 33095908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 33094801 - 33094755
Alignment:
Q  42 gcttctcattttagactctttataacttgtgttcataaattgcttta 88  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||||    
T  33094801 gcttctcattttagactctttataaaatgtgttcataaattgattta 33094755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 40878280 - 40878226
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||||||||    
T  40878280 cgaaattgttaggtcgaacgtcatgattgaggttcgaaccccgatacctccactt 40878226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 54923500 - 54923560
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccga 336  Q
    |||||||  ||||||  |||| ||||||||||| |||||||||| ||||||||||||||||    
T  54923500 tcaactggtaaaaatgtcgaaattgttaggtcggacgtcatgaccggggttcgaactccga 54923560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 51053649 - 51053703
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| |||||||||||||||||||||  ||||||||||| |||||| || |||||    
T  51053649 cgaaattgttaggtcgaacgtcatgatcggggttcgaaccccgacaacttcactt 51053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 31812266 - 31812298
Alignment:
Q  315 atgactggggttcgaactccgacacctccactt 347  Q
    ||||| |||||||||||||||||||||||||||    
T  31812266 atgaccggggttcgaactccgacacctccactt 31812298  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 22792224 - 22792153
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||| |||||||  |||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
T  22792224 tcaactggcaaaaatgccgaaattgttaggtcggacgtcttgacaggggttcgaaccccgacacctccactt 22792153  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 26526527 - 26526598
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||| |||||||  |||| |||||||| ||||||||||||| | |||||||||||||  ||||||||||    
T  26526527 tcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactt 26526598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 13542895 - 13542847
Alignment:
Q  298 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||||| | |||||||||| ||| |||||||||||||||||||||||    
T  13542895 ttgttaggttggacgtcatgaccggg-ttcgaactccgacacctccactt 13542847  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 13849357 - 13849441
Alignment:
Q  264 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||||| || |||||||||||||||  |||| ||||||||||  ||||| |||  ||||||||||| |||||||||||||||    
T  13849357 cataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactt 13849441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 22988105 - 22988034
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||| |||||||||  |||| ||||||||||||||||||||||| | |||||||| |||| ||||| ||||    
T  22988105 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgactagagttcgaaccccgatacctctactt 22988034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 22717112 - 22717183
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||| |||||||||  |||| ||||||||||||||||||||| | | |||||||| |||| ||||| ||||    
T  22717112 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgattagagttcgaaccccgatacctctactt 22717183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 27031906 - 27031857
Alignment:
Q  298 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| |||||| |||||||||| | ||||||||||||||||||| |||||    
T  27031906 ttgtcaggtcgtacgtcatgaccgtggttcgaactccgacaccttcactt 27031857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 15540061 - 15540105
Alignment:
Q  300 gttaggtcgaacgtcatgactggggttcgaactccgacacctcca 344  Q
    |||||||||||||| |||| ||||||||||||| || ||||||||    
T  15540061 gttaggtcgaacgttatgattggggttcgaacttcggcacctcca 15540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 46343330 - 46343398
Alignment:
Q  264 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 331  Q
    ||||||||| || ||||||||||||| |  |||| |||||||| || |||||||||| |||||||||||    
T  46343330 cataagtcctagctcaactgacaaaagtgccgaaattgttaggccggacgtcatgaccggggttcgaac 46343398  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 7204635 - 7204551
Alignment:
Q  264 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||||| || ||||||| |||||||  |||| |||||||| ||||| ||||||| ||||||||||| |||| ||||||||||    
T  7204635 cataagtcctagctcaactggcaaaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctccactt 7204551  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 236584 - 236639
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 331  Q
    |||||||||||||||  |||| |||||||| || |||||||||| |||||||||||    
T  236584 tcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaac 236639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 11064377 - 11064322
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 331  Q
    |||||||| ||||||  ||||||| ||| |||||||| ||||||||||||||||||    
T  11064377 tcaactgataaaaatgtcgaatttattaagtcgaacgccatgactggggttcgaac 11064322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 40685560 - 40685611
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 344  Q
    |||| ||||||||||| | |||||||| |||||||||||||||| |||||||    
T  40685560 cgaaattgttaggtcggatgtcatgaccggggttcgaactccgatacctcca 40685611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 29511132 - 29511190
Alignment:
Q  286 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 344  Q
    ||||| ||||| |||||||| |||| |||||||| ||||||||||| |||| |||||||    
T  29511132 aaaatgacgaaattgttaggccgaatgtcatgaccggggttcgaaccccgatacctcca 29511190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 3728444 - 3728369
Alignment:
Q  271 ccagatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| |||||||||||||  | |||| ||||||||||| | ||||||| |||||||||||| |||| ||||||||||    
T  3728444 ccagctcaactgacaaaatat-cgaaattgttaggtcggatgtcatgattggggttcgaaccccgatacctccactt 3728369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 11098187 - 11098133
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 331  Q
    |||||||||||||  | |||| ||||||||||||| ||||||||||||||||||||    
T  11098187 tcaactgacaaaatat-cgaaattgttaggtcgaatgtcatgactggggttcgaac 11098133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 4312164 - 4312218
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| ||||||||||| | | ||||||||||||||||||||||  ||||||||||    
T  4312164 cgaaattgttaggtcggatgccatgactggggttcgaactccggtacctccactt 4312218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 31291235 - 31291289
Alignment:
Q  278 aactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaact 332  Q
    |||||||||||||  |||| |||||||| ||||||||||||  ||||||||||||    
T  31291235 aactgacaaaaatgccgaaattgttaggccgaacgtcatgatcggggttcgaact 31291289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 36442337 - 36442391
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||  ||||||||||    
T  36442337 cgaaattgttaggtcggatgtcatgattggggttcgaactccggtacctccactt 36442391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 43149474 - 43149421
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||| ||||||||||| ||||||| |||  |||||||||||||||||||||||||    
T  43149474 cgaaattgttaggtcggacgtcat-actaaggttcgaactccgacacctccactt 43149421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 37817400 - 37817461
Alignment:
Q  286 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||| ||||| ||||||||||| | | |||||| ||||||||||| |||| ||||||||||    
T  37817400 aaaatgacgaaattgttaggtcggatgccatgaccggggttcgaaccccgatacctccactt 37817461  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 347
Target Start/End: Original strand, 24333338 - 24333426
Alignment:
Q  260 gtcacataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||||||||| || |||||| ||||||||  |||| |||||||| ||| ||||||||  ||||||||||||||   ||||||||||    
T  24333338 gtcacataagtcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcatgatcggggttcgaactccagtacctccactt 24333426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 6328288 - 6328217
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    ||||||| |||||||  | || ||||||||| | ||||||||||| |||||||||| |||| ||||||||||    
T  6328288 tcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactt 6328217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 15320149 - 15320195
Alignment:
Q  42 gcttctcattttagactctttataacttgtgttcataaattgcttta 88  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||||    
T  15320149 gcttctcattttagattctttataaagtgtgctcataaattgcttta 15320195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 35289860 - 35289917
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactc 333  Q
    |||||||||||||||   ||| ||||||||||  ||||||||| ||||||||||||||    
T  35289860 tcaactgacaaaaatgctgaaattgttaggtcagacgtcatgattggggttcgaactc 35289917  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 40698538 - 40698582
Alignment:
Q  42 gcttctcattttagactctttataacttgtgttcataaattgctt 86  Q
    ||||||||| |||| |||||||||| ||||| |||||||||||||    
T  40698538 gcttctcatgttagtctctttataaattgtgctcataaattgctt 40698582  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 39417457 - 39417527
Alignment:
Q  276 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||||||||||||||  |||| |||||||| || | |||||||| |||||||||||||||| | ||||||||    
T  39417457 tcaactgacaaaaataccgaaattgttaggccggatgtcatgac-ggggttcgaactccgatatctccactt 39417527  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 22999123 - 22999160
Alignment:
Q  310 acgtcatgactggggttcgaactccgacacctccactt 347  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  22999123 acgtcatgaccggggttcgaaccccgacacctccactt 22999160  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 19440 - 19359
Alignment:
Q  264 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 344  Q
    ||||||||| || ||||||| |||||||   ||| |||||||| || ||||||||| |||||||||||| |||| |||||||    
T  19440 cataagtcctagttcaactggcaaaaatgttgaaattgttaggccggacgtcatgattggggttcgaaccccgatacctcca 19359  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 31242087 - 31242034
Alignment:
Q  293 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccact 346  Q
    |||| |||||||| || |||||||||| ||||||||||  ||||||||||||||    
T  31242087 cgaaattgttaggccggacgtcatgaccggggttcgaatcccgacacctccact 31242034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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