View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_high_9 (Length: 342)
Name: NF5834_high_9
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 43554293 - 43553984
Alignment:
| Q |
14 |
ttctcaagtgatcgacgagaatgggaattcggcattgcatcatgcttgtaataaaggacacagagagactgtatggatcctactaaaacgcgattcaaat |
113 |
Q |
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| T |
43554293 |
ttctcaagtgatcgacgagaatgggaattcggcattgcatcatgcttgtaataaaggacacagagagactgtatggatcctactaaaacgcgattcaaat |
43554194 |
T |
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| Q |
114 |
gttgctttacaatacaacaacaatggttatacaccattgcaccttgcagtaatgaacggaaaagtctcgatcctcgatgattttgtgtcaggaagtgctg |
213 |
Q |
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| T |
43554193 |
gttgctttacaatacaacaacaatggttatacaccattgcaccttgcagtaatgaacggaaaagtctcgatcctcgatgattttgtgtcaggaagtgctg |
43554094 |
T |
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| Q |
214 |
catcatttcattatctaacaagagaagaagagacggtatttcatttagccgtgagatatggatgctatgatgctttggttttcttggtgcaagtttccaa |
313 |
Q |
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| T |
43554093 |
catcatttcattatctaacaagagaagaagagacggtatttcatttagccgtgagatatggatgctatgatgctttggttttcttggtgcaagtttccaa |
43553994 |
T |
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| Q |
314 |
tggtacaaac |
323 |
Q |
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|||||||||| |
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| T |
43553993 |
tggtacaaac |
43553984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 43550289 - 43549984
Alignment:
| Q |
17 |
tcaagtgatcgacgagaatgggaattcggcattgcatcatgcttgtaataaaggacacagagagactgtatggatcctactaaaacgcgattcaaatgtt |
116 |
Q |
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| T |
43550289 |
tcaagtgatcgacgagaaagggaatacagcattgcatcatgcttgttataaaggacactttgagattgtatggatcctactaagtcgcgattcaaaactt |
43550190 |
T |
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| Q |
117 |
gctttacaatacaacaacaatggttatacaccattgcaccttgcagtaatgaacggaaaagtctcgatcctcgatgattttgtgtcaggaagtgctgcat |
216 |
Q |
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| T |
43550189 |
gctttacaatacaacaacaatggttatacaccattgcatcttgcagtgattaaggggaaagtctcaacccttgactattttgtggtagtaagtactgcgt |
43550090 |
T |
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| Q |
217 |
catttcattatctaacaagagaagaagagacggtatttcatttagccgtgagatatggatgctatgatgctttggttttcttggtgcaagtttccaatgg |
316 |
Q |
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||||| |||| ||||||||||||||||| ||| ||||| |||| |||||||||||||| ||||| ||||| |||||||||||| |||| || |||| |
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| T |
43550089 |
actttcactatcccacaagagaagaagagacagtacttcatctagctgtgagatatggatgttatgacgctttagttttcttggtgagagttgcctatgg |
43549990 |
T |
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| Q |
317 |
tacaaa |
322 |
Q |
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|||||| |
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| T |
43549989 |
tacaaa |
43549984 |
T |
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