View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5834_low_1 (Length: 575)
Name: NF5834_low_1
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 404 - 569
Target Start/End: Complemental strand, 34541243 - 34541078
Alignment:
| Q |
404 |
gtgcctaaactaaacaaagtgtagctgtaatccaaagaagaagaagaacataagcgtaactgttaagcaagatttattttaggaattttgccatttatct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34541243 |
gtgcctaaactaaacaaagtgtagctgtaatccaaagaagaagaaaaacataagcgtaactgttaagcaagatttgttttaggaattttgccatttatct |
34541144 |
T |
|
| Q |
504 |
gtgtttatatatttgacagccgtagccatttctgcttaaacaatatttctatagctttcatctcac |
569 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34541143 |
gtgcttatatatttgacagccgtatccatttctgcttaaacaatatttctattgctttcatgtcac |
34541078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 34541627 - 34541456
Alignment:
| Q |
18 |
aaaatagggaaagtcatattagatgacagtacacaattatgggtacattttgcnnnnnnnaaggaaaagattatgagtacacaattatttgattctttgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34541627 |
aaaatagggaaagtcatattagatgacagtacacaattatgggtacatttttctttttttaaggaaaagattatgggtacacaattatttgattctttgt |
34541528 |
T |
|
| Q |
118 |
caaaaaatttaatgannnnnnnnnnnnnntttataacatgtttacataaaatttcagtttatttttattagctctt |
193 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34541527 |
caaaaaatttaatga----atatatatagtttataacatgtttacattaaatttcagtttatttttattagctctt |
34541456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 34541408 - 34541308
Alignment:
| Q |
241 |
tgagtttatttttggttcaatgttc--attaaacttttatagatataaacatatgcatacattttatgaattttataggtgttttgtgtacgattcttaa |
338 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34541408 |
tgagtttatttttggttcaatgttctcattaaacttttttagatataaacatatgcatacattttatgaattttataggtgttttgtgtacgattcttaa |
34541309 |
T |
|
| Q |
339 |
c |
339 |
Q |
| |
|
| |
|
|
| T |
34541308 |
c |
34541308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University