View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_low_10 (Length: 339)
Name: NF5834_low_10
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_10 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 47477372 - 47477048
Alignment:
| Q |
15 |
caaaggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgataca |
114 |
Q |
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| T |
47477372 |
caaaggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcaatgttgaatacattgatctctattatcagcacagagtcgataca |
47477273 |
T |
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| Q |
115 |
accgtgcctattgaggatacagttaaggatatttcttcctatgtaaaactagtatttgatttgagcatagtacacggcaacacgttacatatacatgttg |
214 |
Q |
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| T |
47477272 |
accgtgcctattgaggatacagttaaggatatttcttcctatgtaaaactagtatttgatttgagcatagtacacggcaacaagttacatatacatgttg |
47477173 |
T |
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| Q |
215 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataagctggtcttgtagggttgagttattgacaattcaaat |
314 |
Q |
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| T |
47477172 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataaactggtcttgtagggttgagttattgacaattcaaat |
47477073 |
T |
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| Q |
315 |
ttgaagattatttggcttatttcac |
339 |
Q |
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| T |
47477072 |
ttgaagattatttggcttatttcac |
47477048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 215 - 339
Target Start/End: Complemental strand, 47473874 - 47473750
Alignment:
| Q |
215 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataagctggtcttgtagggttgagttattgacaattcaaat |
314 |
Q |
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| T |
47473874 |
atatgcttacattatttgttgagagtcccaaattataaatgggagactcccataccttgataagctggttttctagggttgagttattgacaattcaaat |
47473775 |
T |
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| Q |
315 |
ttgaagattatttggcttatttcac |
339 |
Q |
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| T |
47473774 |
ttgaagattatttggcttatttcac |
47473750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 47486661 - 47486544
Alignment:
| Q |
17 |
aaggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaac |
116 |
Q |
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| T |
47486661 |
aaggttcaccggattatgtgcgttcatgctgcgaagctagcttgaaacgtctcgatgtcgaatacattgatctgtattatcagcacagagtggatacatc |
47486562 |
T |
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| Q |
117 |
cgtgcctattgaggatac |
134 |
Q |
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| T |
47486561 |
tgtgcctatagaggatac |
47486544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 47474034 - 47473898
Alignment:
| Q |
19 |
ggttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaaccg |
118 |
Q |
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|||||||| ||||| ||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | | |
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| T |
47474034 |
ggttcacctgagtacgtgcgctcgtgttgtgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagaattgatacttctg |
47473935 |
T |
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| Q |
119 |
tgcctattgaggatacagttaaggatatttcttccta |
155 |
Q |
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| T |
47473934 |
tgtctattgaggatacagttaaggatatttcttccta |
47473898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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