View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5834_low_11 (Length: 324)

Name: NF5834_low_11
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5834_low_11
NF5834_low_11
[»] chr8 (8 HSPs)
chr8 (1-308)||(5272573-5272880)
chr8 (3-132)||(5249670-5249799)
chr8 (3-136)||(5276716-5276849)
chr8 (3-145)||(5268905-5269047)
chr8 (227-308)||(5276552-5276633)
chr8 (253-308)||(5249933-5249988)
chr8 (225-277)||(5269125-5269177)
chr8 (225-261)||(14944321-14944357)
[»] chr2 (3 HSPs)
chr2 (3-111)||(43110843-43110951)
chr2 (3-105)||(26315741-26315843)
chr2 (2-49)||(43105440-43105487)
[»] chr5 (1 HSPs)
chr5 (12-107)||(19569148-19569243)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 5272880 - 5272573
Alignment:
Q  1 tatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5272880 tatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccaca 5272781  T
Q  101 atgccttggaattccgtcatggtatgttttttattctcttcatattcatgtgttctattttcattcattagaaattctgcatggtgttaatttgcataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5272780 atgccttggaattccgtcatggtatgttttttattctcttcatattcatgtgttctattttcattcattagaaattctgcatggtgttaatttgcataaa 5272681  T
Q  201 tatattattaactttattctttcttgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatgctgtaaccattgaagagattgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5272680 tatattattaactttattctttcttgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatggtgtaaccattgaagagattgaa 5272581  T
Q  301 aaggttct 308  Q
    ||||||||    
T  5272580 aaggttct 5272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 5249670 - 5249799
Alignment:
Q  3 tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactat 102  Q
    ||||||| ||||| |||||||| ||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5249670 tttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactat 5249769  T
Q  103 gccttggaattccgtcatggtatgtttttt 132  Q
    ||||||||||||  ||||||||||||||||    
T  5249770 gccttggaattctctcatggtatgtttttt 5249799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 5276849 - 5276716
Alignment:
Q  3 tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactat 102  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||    
T  5276849 tttttgattttgacaaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctacaat 5276750  T
Q  103 gccttggaattccgtcatggtatgttttttattc 136  Q
    |||||||||||| || |||||||| |||||||||    
T  5276749 gccttggaattctgttatggtatgctttttattc 5276716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 5268905 - 5269047
Alignment:
Q  3 tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactat 102  Q
    |||| ||||| || |||||||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  5268905 ttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcccactat 5269004  T
Q  103 gccttggaattccgtcatggtatgttttttattctcttcatat 145  Q
    |||||  |||||  ||||||||||||||| | ||| |||||||    
T  5269005 gcctttcaattctctcatggtatgtttttcactcttttcatat 5269047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 5276633 - 5276552
Alignment:
Q  227 ttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatgctgtaaccattgaagagattgaaaaggttct 308  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||    
T  5276633 ttttggttttggaattgtaggacaaaatgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaggttct 5276552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 5249933 - 5249988
Alignment:
Q  253 atgatgatggaatttcattcaaatgctgtaaccattgaagagattgaaaaggttct 308  Q
    |||||||||||  |||||||||||| |  ||||||||||||||||||||| |||||    
T  5249933 atgatgatggagattcattcaaatggtaaaaccattgaagagattgaaaaagttct 5249988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 5269125 - 5269177
Alignment:
Q  225 tgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatg 277  Q
    ||||||||||||| || || |||||| ||||||||||||  ||||||||||||    
T  5269125 tgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatg 5269177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 14944321 - 14944357
Alignment:
Q  225 tgttttggttttgaaattataggacaaaatgatgatg 261  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  14944321 tgttttggttttggaattataggacaagatgatgatg 14944357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 43110951 - 43110843
Alignment:
Q  3 tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactat 102  Q
    ||||||||||||||||||||||  |||| ||||| |||||||| ||| |  ||||||||||||||||||| |||||||||||| | ||  ||||||| ||    
T  43110951 tttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaacttgttcccaccat 43110852  T
Q  103 gccttggaa 111  Q
    ||| |||||    
T  43110851 gccatggaa 43110843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 26315843 - 26315741
Alignment:
Q  3 tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactat 102  Q
    |||| ||||||||||||||||| ||||| ||||| || ||||| ||| |  |||||||||| |||||||  |||||||||||||| ||| ||||||| ||    
T  26315843 ttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccaccat 26315744  T
Q  103 gcc 105  Q
    |||    
T  26315743 gcc 26315741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 43105487 - 43105440
Alignment:
Q  2 atttttgactttgacaaaaccatcattgattgtgatagtgataattgg 49  Q
    |||||||||||||||  ||| |||||||| ||||||||||||||||||    
T  43105487 atttttgactttgactcaacaatcattgaatgtgatagtgataattgg 43105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 19569148 - 19569243
Alignment:
Q  12 ttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccactatgcctt 107  Q
    |||| |||||| | ||||||||||||||||||||||||    |||||||||| ||||||| ||||||||||||||| |||||||  ||||||||||    
T  19569148 ttgataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctt 19569243  T

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