View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_low_12 (Length: 323)
Name: NF5834_low_12
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 43554271 - 43554593
Alignment:
| Q |
1 |
cattctcgtcgatcacttgagaaagatctggccacctgttcaacaactctctaacaatatctgcatagaaagtcaacagtttagaatatatcttacataa |
100 |
Q |
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| T |
43554271 |
cattctcgtcgatcacttgagaaagatctggccacctgttcaacaactctctaacaatatctgcatagaaagtcaacagtttaggatatatcttacataa |
43554370 |
T |
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| Q |
101 |
actatatagaatttccaatccatcaccttattattagtgattaaggatgagcttaatttcatttttggtccacaaatattaacattgtgcaattttagtc |
200 |
Q |
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| T |
43554371 |
actatatagaatttccaatccatcaccttattattagtgattaaggatgagcttaatttcatttttggtccacaaatattaacattgtgcaattttagtc |
43554470 |
T |
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| Q |
201 |
ctcaggtatctcaatttctacaatcaaattccgctgtctattaaccatctaatttttaaccctataggctacgtgagtcttagttgacgttgacctaacc |
300 |
Q |
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| T |
43554471 |
cttaggtatctcaatttctacaatcaaattccgctgtctattaaccatctaatttttaaccctataggctacgtgagtcttagttgacgttgacctaacc |
43554570 |
T |
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| Q |
301 |
aatttggcaaactgaagtgccca |
323 |
Q |
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| T |
43554571 |
aatttggcaaactgaagtgccca |
43554593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 43550272 - 43550413
Alignment:
| Q |
3 |
ttctcgtcgatcacttgagaaagatctggccacctgttcaacaactctctaacaatatctgcatagaaagtcaacagtttagaatatatcttacataaac |
102 |
Q |
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|||||||||||||||||| |||||| |||||| ||||||||| ||||||||| | ||||||||||| | ||||| |||||| | ||| ||||||| | | |
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| T |
43550272 |
ttctcgtcgatcacttgaataagatccggccacttgttcaacagctctctaacgacatctgcatagacaatcaaccgtttaggagataacttacatcagc |
43550371 |
T |
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| Q |
103 |
tatatagaatttccaatccatcaccttattattagtgattaa |
144 |
Q |
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| T |
43550372 |
tatataagattttcagtccatcaccttattattagtgattaa |
43550413 |
T |
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