View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_low_13 (Length: 291)
Name: NF5834_low_13
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 44729648 - 44729374
Alignment:
| Q |
18 |
agaagcgctatgaaggt---tatgtggagggagaaaagctgtggggtccatatttaagagcagaattcaggggttgaaataaggacacaaatgttaaccc |
114 |
Q |
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| T |
44729648 |
agaagcgctatgaaggtggttatgtggagggagaaaagctgtggggtccatatttaagagcagaattcaggggttgaaataaggacacaaatgttaaccc |
44729549 |
T |
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| Q |
115 |
ttggctacttgatggcagatattttaacaatggaggaatgcagaggcagggaggtaaagcacgtggagcagattgtaacaacattcatagattggttgga |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44729548 |
ttggctacttgatggcagatattttaacaatggatgaatgcagaggcagggaggtaaagcacgtggagcagattgtaacaacattcatagattggttgga |
44729449 |
T |
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| Q |
215 |
agtgttaagatcggaaggaatcatgaaacaaaatcaccaatactcatgcgacacgttgatgtgttagaatctgtg |
289 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44729448 |
agagttaagatcggaaggaatcatgaaacaaaatcaccaatactcatgcgacacgttgatgtgttagaatctgtg |
44729374 |
T |
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