View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_low_20 (Length: 244)
Name: NF5834_low_20
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 26415365 - 26415140
Alignment:
| Q |
18 |
tgaagtacttttttccaggaggggccggttaaaaatgttcttataagacatatttttacaaggatattttgaagaattcaattatttttcattacatgaa |
117 |
Q |
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| T |
26415365 |
tgaagtacttttttccaggaggggccggttaaaaatgttcttataagacatatttttataaggatattttgaagaattcaatt-tttttcattacattaa |
26415267 |
T |
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| Q |
118 |
aaaattaaaggaaattgcttactggtattattaattaacgttaatctcttattttatacataatttgtcctatatgtagactaaacccttaacgagcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26415266 |
aaaattaaaggaaattgcttactggtattattaattaacgttaatctcttattttatacataatttgtcctatatgtagactaaacccttaacgagcttg |
26415167 |
T |
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| Q |
218 |
gtggtgtaacctactccctccaacact |
244 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
26415166 |
gtggtgtaacttactccctccaacact |
26415140 |
T |
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