View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_low_22 (Length: 239)
Name: NF5834_low_22
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 54979905 - 54979690
Alignment:
| Q |
9 |
aagcaaaggtaagtctcatgtttatcatactacaagtttcaagaattagattgacagctaatactgcttcatgatttagcaagtggatacagccattctc |
108 |
Q |
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| T |
54979905 |
aagcaatggtaagtctcatgtttatcatactacaagtttcaagaattagattgacagctaatactgcttcatgatttagcaagtggatacagccattctc |
54979806 |
T |
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| Q |
109 |
agtctttcgaaggacgaagctctagaaaaaccatacacggcttcgatgggaatgtgcgtcttcaagaaatacttcttaatctattaaggtacagataatg |
208 |
Q |
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| T |
54979805 |
agtctatcgaaggacgaagctctagaaaaaccatacacggcttcgatgggagtgtgcgtcttcaagaaatacttcttaatctattaaggtacagataatg |
54979706 |
T |
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| Q |
209 |
ttgtatcaaaatgttg |
224 |
Q |
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|||||||||||||||| |
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| T |
54979705 |
ttgtatcaaaatgttg |
54979690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 54971463 - 54971272
Alignment:
| Q |
34 |
catactacaagtttcaagaattagattgacagctaatactgcttcatgatttagcaagtggatacagccattctcagtctttcgaaggacgaagctctag |
133 |
Q |
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||||||||||||||||||| ||||| | ||| ||||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||| |
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| T |
54971463 |
catactacaagtttcaagagttagactcaca--taatactgcttcatgataaagcaagtggatacaaccgttctcggtctttcaaaggacgaagctctag |
54971366 |
T |
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| Q |
134 |
aaaaaccatacacggcttcgatgggaatgtgcgtcttcaagaa----atacttcttaatctattaaggtacagataatgttgtatcaaaatgtt |
223 |
Q |
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| T |
54971365 |
aaaaaccatacattgcttcaatgggagtgtacgtcttcaagaaagagatacttcttaatttattaaggtacagataatgttgtatcaaaatgtt |
54971272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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