View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5834_low_26 (Length: 220)
Name: NF5834_low_26
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5834_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 36942527 - 36942413
Alignment:
| Q |
17 |
cacagattaaacaccacaatgcccagcgatcgccatcacaaacaacaacctctcaaccacatatcctcattgaaaacctccctctctccattatcaaagc |
116 |
Q |
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| T |
36942527 |
cacagattaaacaccacaatgcccagcgatcgccatcacaaacaacaacctctcaaccacatatcctcattgaaaacatccctctctccattatcaaagc |
36942428 |
T |
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| Q |
117 |
tacactcatgggtca |
131 |
Q |
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| T |
36942427 |
tacactcatgggtca |
36942413 |
T |
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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 36936392 - 36936313
Alignment:
| Q |
127 |
ggtcagaatcccaaacgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtt |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36936392 |
ggtcagaatcccaaatgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtt |
36936313 |
T |
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