View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5834_low_8 (Length: 392)

Name: NF5834_low_8
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5834_low_8
NF5834_low_8
[»] chr1 (10 HSPs)
chr1 (18-382)||(3138314-3138676)
chr1 (155-313)||(8382230-8382390)
chr1 (156-311)||(31834820-31834979)
chr1 (324-382)||(10648197-10648255)
chr1 (320-382)||(44452205-44452267)
chr1 (318-375)||(38786949-38787006)
chr1 (309-351)||(12685925-12685967)
chr1 (321-375)||(40883422-40883476)
chr1 (320-382)||(52688540-52688601)
chr1 (338-382)||(33730190-33730234)
[»] chr5 (9 HSPs)
chr5 (309-382)||(30788204-30788277)
chr5 (242-313)||(32218846-32218917)
chr5 (309-385)||(39925202-39925278)
chr5 (323-382)||(2799644-2799703)
chr5 (327-382)||(34347484-34347539)
chr5 (309-375)||(33402590-33402656)
chr5 (318-382)||(2805805-2805869)
chr5 (327-382)||(32474014-32474069)
chr5 (310-382)||(20040407-20040479)
[»] chr4 (8 HSPs)
chr4 (307-382)||(29821047-29821122)
chr4 (319-382)||(1613209-1613272)
chr4 (319-382)||(47834135-47834198)
chr4 (309-382)||(43447164-43447237)
chr4 (326-382)||(37164032-37164088)
chr4 (310-382)||(40411600-40411672)
chr4 (310-382)||(42185274-42185346)
chr4 (319-375)||(48336426-48336482)
[»] chr6 (6 HSPs)
chr6 (320-376)||(16661604-16661660)
chr6 (310-382)||(2667321-2667393)
chr6 (310-382)||(31948637-31948709)
chr6 (327-382)||(10109407-10109462)
chr6 (310-375)||(24949535-24949600)
chr6 (310-382)||(17496314-17496386)
[»] scaffold1248 (1 HSPs)
scaffold1248 (321-382)||(1448-1509)
[»] scaffold0952 (1 HSPs)
scaffold0952 (321-382)||(804-865)
[»] chr8 (7 HSPs)
chr8 (309-382)||(20671255-20671328)
chr8 (326-375)||(66942-66991)
chr8 (310-375)||(44717296-44717361)
chr8 (319-382)||(4960160-4960223)
chr8 (319-382)||(8496875-8496938)
chr8 (310-375)||(3466283-3466348)
chr8 (310-382)||(14378675-14378747)
[»] chr3 (2 HSPs)
chr3 (310-375)||(18013464-18013529)
chr3 (321-375)||(36594413-36594467)
[»] chr7 (9 HSPs)
chr7 (310-382)||(37101018-37101090)
chr7 (327-382)||(38850719-38850774)
chr7 (320-376)||(47713430-47713486)
chr7 (323-382)||(18756612-18756671)
chr7 (319-382)||(40818689-40818752)
chr7 (325-382)||(19817320-19817377)
chr7 (309-382)||(30462213-30462286)
chr7 (310-382)||(16807138-16807210)
chr7 (320-376)||(33376785-33376841)
[»] chr2 (9 HSPs)
chr2 (327-382)||(8896288-8896343)
chr2 (319-382)||(16126073-16126136)
chr2 (319-382)||(16333489-16333552)
chr2 (319-382)||(18504481-18504544)
chr2 (327-382)||(43328792-43328847)
chr2 (332-382)||(2831729-2831779)
chr2 (153-237)||(43779476-43779561)
chr2 (310-382)||(10333569-10333641)
chr2 (319-375)||(16127778-16127834)
[»] scaffold0204 (1 HSPs)
scaffold0204 (319-375)||(23948-24004)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 3138314 - 3138676
Alignment:
Q  18 aactcttacactgatccaactcttttcaagtgcgataagaatgtattatattcatatcataatcttattcaactttcttgttatataccagctatgctat 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3138314 aactcttacactgatccaactcttttcaa-tgcgataagaatgtattatattcatatcataatcttattcaactttcttgttatataccagctatgctat 3138412  T
Q  118 ttagacacacaaaaacttccgaaactatatacgaattagcctatgtttggcttgcggtgccatttccacatcaggctaaaaccacggctagaagttacat 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3138413 ttagacacacaaaaacttccaaaactatatacgaattagcctatgtttggcttgcggtgccatttccacatcaggctaaaaccacggctagaagttacat 3138512  T
Q  218 tttcagtgaagttacatataagttttttccaaatcacggtaaaaaggcttcaaagagtgcgtctttcattgccaaactctaaaccaaacacatactcccg 317  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3138513 tttcagtgaagttacatataagttttttccaaatcacggtaataaggcttcaaagagtgcgtctttcattgccaaactctaaaccaaacacatactccca 3138612  T
Q  318 tcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
      |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||    
T  3138613 cagtcccgtaatagatga-ccatttgaaaatgtgtgtttttgacataacttactttgaccatatt 3138676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 313
Target Start/End: Complemental strand, 8382390 - 8382230
Alignment:
Q  155 agcctatgtttggct-tgcggtgccatttccacatcaggctaaaaccacggctagaagttacattttcagtgaagttacatata--agttttttccaaat 251  Q
    ||||||||||||||| ||||||||||||||||||||| || |||| ||||||  ||| | || ||| |||||||| ||| ||||  ||  |||||| |||    
T  8382390 agcctatgtttggctgtgcggtgccatttccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtag-cttttccgaat 8382292  T
Q  252 cacggtaaaaaggcttcaaagagtgcgtctttcattgccaaactctaaaccaaacacatact 313  Q
    ||||| ||||||||||||||  ||||| |   |||||  |||||||||||||||||||||||    
T  8382291 cacggcaaaaaggcttcaaaacgtgcggcagccattggaaaactctaaaccaaacacatact 8382230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 31834979 - 31834820
Alignment:
Q  156 gcctatgtttggct-tgcggtgccatttccacatcaggctaaaaccacggctagaagttacattttcagtgaagttacatata-agtt--ttttccaaat 251  Q
    |||||||||||| | |||| |||||||| |||||||||  ||||||||| | |||| | || ||| || ||||| |||||||| |||   |||| |||||    
T  31834979 gcctatgtttggttgtgcgatgccattttcacatcaggtcaaaaccacgacaagaactcacgtttccaatgaagctacatatatagtagctttttcaaat 31834880  T
Q  252 cacggtaaaaaggcttcaaagagtgcgtctttcattgccaaactctaaaccaaacacata 311  Q
    ||||| | ||||| ||||||  ||| |||  ||||||| |||||||||||||||||||||    
T  31834879 cacggaacaaaggtttcaaaacgtgtgtcagtcattgcaaaactctaaaccaaacacata 31834820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 10648255 - 10648197
Alignment:
Q  324 cgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||||||||| |||||||||||||| |||||| | ||||||| |||||| |||||    
T  10648255 cgtaatagatgatctatttgaaaatgtgtaattttgacctaacttattttgaccatatt 10648197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 44452205 - 44452267
Alignment:
Q  320 gtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||| ||||||||  |||||||||||||||| |||||| | |||||||||||||| |||||    
T  44452205 gtcccgcaatagatgtcccatttgaaaatgtgtaattttgacctaacttactttgaccatatt 44452267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 38787006 - 38786949
Alignment:
Q  318 tcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    |||| |||||||||||||||||||||||||| ||  ||||||  ||||||||||||||    
T  38787006 tcgttccgtaatagatgatccatttgaaaatatgcaattttgatataacttactttga 38786949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 12685967 - 12685925
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtg 351  Q
    |||||||| |||||||||||||||||| || ||||||||||||    
T  12685967 atactcccttcgtcccgtaatagatgacccgtttgaaaatgtg 12685925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 40883422 - 40883476
Alignment:
Q  321 tcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||| |||||||||||||||| ||||||||  |||||| | |||||||||||||    
T  40883422 tcccgcaatagatgatccatttaaaaatgtgaaattttgacctaacttactttga 40883476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 52688540 - 52688601
Alignment:
Q  320 gtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||| ||||||||||| |||||||||||||  |||||| | ||||||||||||||| ||||    
T  52688540 gtcccgcaatagatgatc-atttgaaaatgtggaattttgacctaacttactttgactgtatt 52688601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 33730234 - 33730190
Alignment:
Q  338 catttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||||| |||||| ||||||||||||| || |||||    
T  33730234 catttgaaaatgtgtaattttgacataacttactttaaccatatt 33730190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 30788204 - 30788277
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||  |||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||| |||||    
T  30788204 atactccctccgtcccgtaatatatgacccatttgaaaatgtgtaattttgacataacttactttgaccatatt 30788277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 32218917 - 32218846
Alignment:
Q  242 ttttccaaatcacggtaaaaaggcttcaaagagtgcgtctttcattgccaaactctaaaccaaacacatact 313  Q
    |||||||||||| |  ||||||||||||||  |||||||  |||| ||||||||||||||||||||||||||    
T  32218917 ttttccaaatcatgacaaaaaggcttcaaaacgtgcgtcaatcatcgccaaactctaaaccaaacacatact 32218846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 39925202 - 39925278
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatattatt 385  Q
    ||||||||  ||||||| |||||||||||||||||||||| ||| |||||| |  || |||||||||| ||||||||    
T  39925202 atactccctccgtcccgcaatagatgatccatttgaaaatttgtaattttgaccaaatttactttgaccatattatt 39925278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 2799644 - 2799703
Alignment:
Q  323 ccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||| |||||||||||||||  |||||| | ||||||||||||||| ||||    
T  2799644 ccgtaatagatgacccatttgaaaatgtgcaattttgacctaacttactttgactgtatt 2799703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 34347484 - 34347539
Alignment:
Q  327 aatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||| | |||||||||||||| |||||| |||||||||||||||| |||||    
T  34347484 aatagatgacctatttgaaaatgtgtaattttgacataacttactttgaccatatt 34347539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 33402656 - 33402590
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||||||  |||||||||||||||||||  ||| ||||||||| |||||| | |||||||||||||    
T  33402656 atactccctccgtcccgtaatagatgatctgtttaaaaatgtgtaattttgacctaacttactttga 33402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 2805805 - 2805869
Alignment:
Q  318 tcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||| ||||||||||||| |||||||||||||||  |||||| | ||| ||||||||||| ||||    
T  2805805 tcgttccgtaatagatgacccatttgaaaatgtgcaattttgacctaatttactttgactgtatt 2805869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 32474069 - 32474014
Alignment:
Q  327 aatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||| |||||||||||||||| |||||  ||||||||| |||||| |||||    
T  32474069 aatagatgacccatttgaaaatgtgtaattttaacataacttattttgaccatatt 32474014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 20040479 - 20040407
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  |||||||||||| |||| |  ||||||||||||  |||||| | |||||||||||||| |||||    
T  20040479 tactccctccgtcccgtaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatt 20040407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 29821047 - 29821122
Alignment:
Q  307 acatactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||||  ||||||||||||||||||||||||||||||||||  ||||||   |||||||||||||| |||||    
T  29821047 acatactcctttcgtcccgtaatagatgatccatttgaaaatgtgcaattttgatctaacttactttgaccatatt 29821122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 1613272 - 1613209
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||||||| | |||||||||||||| |||||| | ||| |||||||||| |||||    
T  1613272 cgtcccgtaatagatgacctatttgaaaatgtgtaattttgacctaatttactttgaccatatt 1613209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 47834198 - 47834135
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||| ||| |||||  ||||||||||||||| |||||| |||||||||||||||| |||||    
T  47834198 cgtcccggaatggatgacacatttgaaaatgtgtaattttgacataacttactttgaccatatt 47834135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 43447164 - 43447237
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||  |||||||||||| ||||||  ||||||||||||  |||||| | |||||||||||||| |||||    
T  43447164 atactccctccgtcccgtaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgaccatatt 43447237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 37164032 - 37164088
Alignment:
Q  326 taatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||||| |||||||||||| |   |||||| | ||||||||||||||||||||    
T  37164032 taatagatgacccatttgaaaatatacaattttgacctaacttactttgactatatt 37164088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 40411672 - 40411600
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  |||||||||||| |||| |  ||||||||||||  |||||| | |||||||||||||| |||||    
T  40411672 tactccctccgtcccgtaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatt 40411600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 42185274 - 42185346
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  ||||||| |||||||||||||||||||||| ||  |||||| | ||| ||| |||||| |||||    
T  42185274 tactccctccgtcccgcaatagatgatccatttgaaaatttgcaattttgacctaatttagtttgaccatatt 42185346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 48336482 - 48336426
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||||| |||||||||  ||||||||||||||  |||||| | |||||||||||||    
T  48336482 cgtcccgcaatagatgacacatttgaaaatgtgcaattttgacctaacttactttga 48336426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 16661660 - 16661604
Alignment:
Q  320 gtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgac 376  Q
    |||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||    
T  16661660 gtcccgcaatagatgatccatttgaaaatgtgtaattttgacctaacttactttgac 16661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 2667393 - 2667321
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  ||||||| |||| ||||||  ||||||||||||  |||||| | ||||||||||||||||||||    
T  2667393 tactccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgactatatt 2667321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 31948709 - 31948637
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  |||| || |||||||||||||||||||||||||| ||| || | ||||||| |||||| |||||    
T  31948709 tactccctccgtctcgcaatagatgatccatttgaaaatgtgtaattatgacttaacttattttgaccatatt 31948637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 10109462 - 10109407
Alignment:
Q  327 aatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||||||||||| ||||||||  |||||| | ||||||||||||||| ||||    
T  10109462 aatagatgatccatttaaaaatgtgcaattttgacctaacttactttgactttatt 10109407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 24949535 - 24949600
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    |||||||  ||||||| ||||||||| |||||||||||||||  ||||||   |||||||||||||    
T  24949535 tactccctccgtcccgcaatagatgacccatttgaaaatgtgcaattttgatctaacttactttga 24949600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 17496386 - 17496314
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  ||||||| |||| ||||||  ||||||||||||  |||||| | |||||||||||||| |||||    
T  17496386 tactccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgaccatatt 17496314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 1509 - 1448
Alignment:
Q  321 tcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||||||  |||| ||||||||| |||||| |||||||||||||||| |||||    
T  1509 tcccgtaatagatgatttatttaaaaatgtgtaattttgacataacttactttgaccatatt 1448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 804 - 865
Alignment:
Q  321 tcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||||||  |||| ||||||||| |||||| |||||||||||||||| |||||    
T  804 tcccgtaatagatgatttatttaaaaatgtgtaattttgacataacttactttgaccatatt 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 20671255 - 20671328
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||  |||| || ||||||||||| |||||||||||||| |||||| | |||||||||||||| |||||    
T  20671255 atactccctccgtcgcgcaatagatgatcaatttgaaaatgtgtaattttgacctaacttactttgaccatatt 20671328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 66942 - 66991
Alignment:
Q  326 taatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||| |||||    
T  66942 taatagatgatccatttgaaaatgtgtaattttgacataatttattttga 66991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 44717296 - 44717361
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    |||||||  ||||||| ||| |||||||||||||||||||||| ||||||   |||||||||||||    
T  44717296 tactccctccgtcccgcaatggatgatccatttgaaaatgtgtaattttgaactaacttactttga 44717361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 4960160 - 4960223
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||||||||| |||||||||| ||  |||||| | || ||||||||||| |||||    
T  4960160 cgtcccgtaatagatgatctatttgaaaatttgcaattttgacctagcttactttgaccatatt 4960223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 8496938 - 8496875
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||| ||||||| ||| |||||||||||||||  |||||| | |||||||||||||| |||||    
T  8496938 cgtcctgtaatagttgacccatttgaaaatgtgcaattttgacctaacttactttgaccatatt 8496875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 3466283 - 3466348
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    |||||||  ||||||| ||||||||| ||||||||||||| |  |||||| | |||||||||||||    
T  3466283 tactccctccgtcccgcaatagatgacccatttgaaaatgcgcaattttgacctaacttactttga 3466348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 14378747 - 14378675
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  ||||||| |||| |||||   ||||||||||||  |||||| | ||||||||||||||||||||    
T  14378747 tactccctccgtcccgcaataaatgataggtttgaaaatgtgcaattttgacctaacttactttgactatatt 14378675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 18013529 - 18013464
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    |||||||  ||||||||||||||||| |||||||||||||||  |||||| ||||| |||||||||    
T  18013529 tactccctccgtcccgtaatagatgacccatttgaaaatgtgcaattttgacataatttactttga 18013464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 36594467 - 36594413
Alignment:
Q  321 tcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||| || ||||||||||||||||||||||| |||||| | ||||||| |||||    
T  36594467 tcccgcaacagatgatccatttgaaaatgtgtaattttgacctaacttattttga 36594413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 37101090 - 37101018
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  ||||||| ||||||||| | |||||||||||||| |||||| | |||||||||||||| |||||    
T  37101090 tactccctccgtcccgcaatagatgacctatttgaaaatgtgtaattttgacctaacttactttgaccatatt 37101018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 38850719 - 38850774
Alignment:
Q  327 aatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||| |||||||||||||||| |||||| | |||||||||||||| |||||    
T  38850719 aatagatgacccatttgaaaatgtgtaattttgacctaacttactttgaccatatt 38850774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 47713486 - 47713430
Alignment:
Q  320 gtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgac 376  Q
    ||||| |||||||||| |||||||||||||||  |||||| | ||||||||||||||    
T  47713486 gtcccataatagatgacccatttgaaaatgtgcaattttgacctaacttactttgac 47713430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 18756612 - 18756671
Alignment:
Q  323 ccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||| |||||||||||| ||  |||||| | || |||||||||||||||||    
T  18756612 ccgtaatagatgacccatttgaaaatatgcaattttgacctatcttactttgactatatt 18756671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 40818752 - 40818689
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||||||||| |||||||||||||  ||||||   ||||||||| |||| |||||    
T  40818752 cgtcccgtaatagatgatctatttgaaaatgtgcaattttgatctaacttactctgaccatatt 40818689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 19817320 - 19817377
Alignment:
Q  325 gtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||||| |||||||||||| | |||||  | |||||||||||||| |||||    
T  19817320 gtaatagatgatctatttgaaaatgtataattttaacctaacttactttgacaatatt 19817377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 30462286 - 30462213
Alignment:
Q  309 atactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||  ||||||| |||| ||||||  ||||||||||||  |||||| | |||||||||||||| |||||    
T  30462286 atactccctccgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacttaacttactttgaccatatt 30462213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 16807210 - 16807138
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  |||||||||||| |||| |  ||||||||||||  |||||| | |||||||||||||| |||||    
T  16807210 tactccctccgtcccgtaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatt 16807138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 33376785 - 33376841
Alignment:
Q  320 gtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgac 376  Q
    |||||| |||||||||||||||||||| | | | |||||| | ||||||||||||||    
T  33376785 gtcccgcaatagatgatccatttgaaattttttaattttgacctaacttactttgac 33376841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 8896288 - 8896343
Alignment:
Q  327 aatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||| |||||||||||||||  |||||| | |||||||||||||| |||||    
T  8896288 aatagatgacccatttgaaaatgtgcaattttgacctaacttactttgaccatatt 8896343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 16126136 - 16126073
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||| |||| |||| |||||||||||||||  |||||| | |||||||||||||| |||||    
T  16126136 cgtcccgcaataaatgacccatttgaaaatgtgcaattttgacctaacttactttgaccatatt 16126073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 16333489 - 16333552
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||| |||| |||| |||||||||||||||  |||||| | |||||||||||||| |||||    
T  16333489 cgtcccgcaataaatgacccatttgaaaatgtgcaattttgacctaacttactttgaccatatt 16333552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 18504481 - 18504544
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||||||||||||   |||||||||||||| |||||| | ||||||| |||||| |||||    
T  18504481 cgtcccgtaatagatgacttatttgaaaatgtgtaattttgacgtaacttattttgaccatatt 18504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 43328847 - 43328792
Alignment:
Q  327 aatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||||||||||||||||||| | ||||||   |||||||||||||| |||||    
T  43328847 aatagatgatccatttgaaaatgtataattttgatctaacttactttgaccatatt 43328792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 2831729 - 2831779
Alignment:
Q  332 atgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    ||||||||||| ||||||||| |||||| | |||||||||||||| |||||    
T  2831729 atgatccatttaaaaatgtgtaattttgacctaacttactttgaccatatt 2831779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 43779561 - 43779476
Alignment:
Q  153 ttagcctatgtttggct-tgcggtgccatttccacatcaggctaaaaccacggctagaagttacattttcagtgaagttacatata 237  Q
    ||||||||||||||||| ||| |||||||||||||||||  | |||| ||||||  ||| | || ||| |||||||| ||||||||    
T  43779561 ttagcctatgtttggctgtgcagtgccatttccacatcaaaccaaaatcacggcaggaactcacgtttgcagtgaagctacatata 43779476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 10333641 - 10333569
Alignment:
Q  310 tactcccgtcgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttgactatatt 382  Q
    |||||||  |||| ||||||| ||||||  ||||||||||||| |||||| | ||||||| |||||| |||||    
T  10333641 tactccctccgtctcgtaataaatgatctgtttgaaaatgtgtaattttgacctaacttattttgaccatatt 10333569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 16127834 - 16127778
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||||| |||| |||| | |||||||||||||| |||||| | |||||||||||||    
T  16127834 cgtcccgcaataaatgacctatttgaaaatgtgtaattttgacctaacttactttga 16127778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 24004 - 23948
Alignment:
Q  319 cgtcccgtaatagatgatccatttgaaaatgtgtgattttgtcataacttactttga 375  Q
    ||||||| |||||||||  ||||||||||||||  |||||| | |||||||||||||    
T  24004 cgtcccgcaatagatgacacatttgaaaatgtgcaattttgacctaacttactttga 23948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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