View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5835-Insertion-1 (Length: 1090)
Name: NF5835-Insertion-1
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5835-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 751; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 12 - 956
Target Start/End: Original strand, 10677128 - 10678099
Alignment:
| Q |
12 |
cactcctccaaacaacttatgccttaacttcccttacacacaacttcaatttcagcttatccttgtaatcacaaagcaagcatagtcattaccatgtaca |
111 |
Q |
| |
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| T |
10677128 |
cactcctccaaacaacttatgccttaacttctcttacacacaacttcaatttcagcttatccttgtaatcacaaagcaagcatagtcattaccatctaca |
10677227 |
T |
|
| Q |
112 |
atccttaaattcctttacctagcttcaatctctcttaattcctcttgcttctaaacgtcaatcatatccacaattgaacaaccaaaagcacatgcaaggc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10677228 |
atccttaaattcctttacctagcttcaatctctcttaattcctcttgcttctaaacgtcaatcatatccacaattgaacaaccaaaagcacatgcaaggc |
10677327 |
T |
|
| Q |
212 |
catgcttaagctagttttgcaaaattttccaagaggaccaatggggagggattaggttttgctaattgagtttgaatgatacatggttcatgtttggatg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10677328 |
catgcttaagctagttttgcaaaattttccaagaggaccaatggggagggattaggttttgctaattgagtttgaatgatacatggttcatgtttggatg |
10677427 |
T |
|
| Q |
312 |
attgcatgctgaattaatttgattttggttgagaagtggtggatagagtgagggagggaggatgaggagaagaaatatgctagcatagatgtgaaaattg |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
10677428 |
attgcatgctgaattaatttgattttggttgagaagtggtggatagagtgagggagggaggacgagcagaagaaatatgctagcatagatgtgaaaattg |
10677527 |
T |
|
| Q |
412 |
gaaagcattggtgagttaacgggatacattaaaattactacataatttcgtttgaatgaatacaagcatcgttacaagttcg---------taaaaataa |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||| ||||||||| |
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| T |
10677528 |
caaagcattggtgagttaacgggatacattaaaattacaacataatttcgttcgaatgaatacaaacatcattacaagttcgtaaatctgataaaaataa |
10677627 |
T |
|
| Q |
503 |
catttgccaaatacattgatgtatttctaaatacataagaagttatctaaaactggtacaagacgtgtagatgaaggtaaatcattcggcttccttctgt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10677628 |
catttgccaaatacattgatgtatttctaaatacataagaagttatctaaaactggtacaagacgtgtagatgaaggtaaatcattcggcttccttctgt |
10677727 |
T |
|
| Q |
603 |
cgatacttaccatgagtgacctgcttatctgaaataaaaataaagggattagggtgagtttcacctatcct----tgtagg--------------caaat |
684 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
10677728 |
cgatacttaccacgagtgacatgcttatctgaaataaaaataaagggattagggtgagtttcacctatcctaggatgtaggcaatctcggggagtcaaat |
10677827 |
T |
|
| Q |
685 |
atttagttttaaacacctaaaaagaccattttccgtccatgtgttgatgatttcttgagatacctttcctcatggtgagtcaaatatttagctttaaaca |
784 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10677828 |
atttagttttaaacacctaaaaagaccattttccgtccatgagtcgatgatttcttgagacacctttcctcatggtgagtcaaatatttagctttaaaca |
10677927 |
T |
|
| Q |
785 |
cctaaaaagaccattttccttccacgaagaacataaatttcattttctgatgaatgagagatttcctccatggtgacagatgcacacatttgatcctgtg |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10677928 |
cctaaaaagaccattttccttccacgaagaacataaatttcaatttctgatgaatgagagatttcctccatggtgacagatgcacacatttgatcctgcg |
10678027 |
T |
|
| Q |
885 |
acactgcacacataataatatattgctcaaacattgagatagaaagta-tagatgatc-aagatgactggcttt |
956 |
Q |
| |
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|| || || | ||||||| |||| ||||||||| |||||||||| | |||| |||| ||||||||||||||| |
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|
| T |
10678028 |
actttg--caaaaaataataaattgttcaaacattaagatagaaagaattagaagatcaaagatgactggcttt |
10678099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 765 - 809
Target Start/End: Original strand, 10675474 - 10675518
Alignment:
| Q |
765 |
caaatatttagctttaaacacctaaaaagaccattttccttccac |
809 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
10675474 |
caaatatttagctttaaacacctaaaatgacaattttccttccac |
10675518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 680 - 751
Target Start/End: Original strand, 10675474 - 10675545
Alignment:
| Q |
680 |
caaatatttagttttaaacacctaaaaagaccattttccgtccatgtgttgatgatttcttgagataccttt |
751 |
Q |
| |
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||||||||||| ||||||||||||||| ||| ||||||| |||| || |||||||||| ||||| ||||| |
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| T |
10675474 |
caaatatttagctttaaacacctaaaatgacaattttccttccacaagtcgatgatttctggagatgccttt |
10675545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 852 - 882
Target Start/End: Original strand, 10675616 - 10675646
Alignment:
| Q |
852 |
ccatggtgacagatgcacacatttgatcctg |
882 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
10675616 |
ccatggtgacagatgcacacatttgatcctg |
10675646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 819 - 878
Target Start/End: Original strand, 7936852 - 7936911
Alignment:
| Q |
819 |
aaatttcattttctgatgaatgagagatttcctccatggtgacagatgcacacatttgat |
878 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
7936852 |
aaattccattttctgacgaatgagagatttcctccatgctgactgatgcacacatttgat |
7936911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 1945069 - 1945008
Alignment:
| Q |
434 |
gatacattaaaattactacataatttcgtttgaatgaatacaagcatcgttacaagttcgta |
495 |
Q |
| |
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| T |
1945069 |
gatacattaaaattataacagaatttcgttcgaatgaatacaaacattattacaagttcgta |
1945008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 17863011 - 17863072
Alignment:
| Q |
433 |
ggatacattaaaattactacataatttcgtttgaatgaatacaagcatcgttacaagttcgta |
495 |
Q |
| |
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|
| T |
17863011 |
ggatacattaaaattacaacaagattt-gttcgaatgaatacaagcatcattacaagttcgta |
17863072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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