View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5835-Insertion-5 (Length: 354)

Name: NF5835-Insertion-5
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5835-Insertion-5
NF5835-Insertion-5
[»] chr7 (1 HSPs)
chr7 (6-354)||(30873628-30873976)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 354
Target Start/End: Complemental strand, 30873976 - 30873628
Alignment:
Q  6 tcactaacgtgaccctgcgacagccagctgccgcaggatctgtagtgactttacacggaaggtttgaaatactttctttgtccggatcgtttctaccacc 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30873976 tcactaacgtgaccttgcgacagccagctgccgcaggatctgtagtgactttacatggaaggtttgaaatactttctttgtccggatcgtttctaccacc 30873877  T
Q  106 accagctcctccaggagctacaagtttgagtgtgttccttggcggaggccaaggtcaagttgtgggaggaaatgttgttggtcctttggttgcttctgga 205  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30873876 accagctcctccaggagctacaagtttgagtgtgttccttggtggaggccaaggtcaagttgtgggaggaaatgttgttggtcctttggttgcttctgga 30873777  T
Q  206 ccggttattgtcatcgcttcatcttttacgaatgtagcgtatgagaggttaccgttggatgaagatgaatctcttcagatgcaacaagggcaatcatctg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30873776 ccggttattgtcatcgcttcatcttttacgaatgtagcgtatgagaggttaccgttggatgaagatgaatctcttcagatgcaacaagggcaatcatctg 30873677  T
Q  306 caggtggtggtggcggtggcggtgatggtgtcaataactcttttcccga 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30873676 caggtggtggtggcggtggcggtgatggtgtcaataactcttttcccga 30873628  T

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