View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5835-Insertion-6 (Length: 355)

Name: NF5835-Insertion-6
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5835-Insertion-6
NF5835-Insertion-6
[»] chr1 (1 HSPs)
chr1 (9-355)||(42661994-42662340)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 42661994 - 42662340
Alignment:
Q  9 attggagtagcacgttgacaatttgcaccaatgcgtctctcttcctcgacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatga 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661994 attggagtagcacgttgacaatttccaacaatgcgtctctcttcctcaacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatga 42662093  T
Q  109 aatgatcaagcattctttgaacacaatcaatatcatggattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42662094 aatgatcaagcattctttgaacacaatcaatatcatggattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaa 42662193  T
Q  209 ttgaaaaccaattcttttctccaagcttgcacaacaacaagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgtt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42662194 ttgaaaaccaattcttttctccaagcttgcacaacaacaagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgtt 42662293  T
Q  309 acacccttttcatttggaagcaactcaactatttcttcaatcagatt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42662294 acacccttttcatttggaagcaactcaactatttcttcaatcagatt 42662340  T

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