View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5835_low_1 (Length: 438)
Name: NF5835_low_1
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5835_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 34260933 - 34260508
Alignment:
| Q |
10 |
agatgaaatgcaacataaacgatggtttttcaggtactagaggtgggatggacattggcatttgtctctgacatgatcatagcagagttttgctttgcta |
109 |
Q |
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| T |
34260933 |
agatgaaatgcaacataaacactagtttttcaggtactagaggtgggatggacattgacatttgtctctgacatgatcaaagcagagttttgctttgcta |
34260834 |
T |
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| Q |
110 |
gcgttatagtgccagctttaactaataaattgcgtattatggaagaatagcaattagtttaaatttcgccgcaatttgacaacgctgaaaaatatcacaa |
209 |
Q |
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| T |
34260833 |
gtgttatagtgcccgctttaactactaaattgcgtattatcgaagaatagcaatttgtttaaatttcgccgcaatttgacaacgctgacaaatatcacaa |
34260734 |
T |
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| Q |
210 |
acaaactccatgaacatacatttatctaacaacagaaaaaacctaatatgatttaattgatcagaatttatcgaacttgaatgttattagactaacatta |
309 |
Q |
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| T |
34260733 |
acaaactccatgaacatacatttatctaacaacagaaaaaacctaatatgatttaattaatcagaatttatcgaacttgaatgttattagactaacatta |
34260634 |
T |
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| Q |
310 |
tatatatnnnnnnnnnngtgctatgccttgtttcttaaaattacattatatgcgaaaaaacaaacccctcaatttatctgttgtcagaaagcaaaagaag |
409 |
Q |
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||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34260633 |
tatatat--aaaaaaaagtgctatgccttgtttcttaaaattacaat-tatgtgaaaaaacaaacccctcaatttatctgttgtcagaaagcaaaagaag |
34260537 |
T |
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| Q |
410 |
aaacctttaaatttttcaaagtgtttaat |
438 |
Q |
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| T |
34260536 |
aaagctttaaatttttcaaagtgtttaat |
34260508 |
T |
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