View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5835_low_2 (Length: 437)
Name: NF5835_low_2
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5835_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 45965680 - 45966101
Alignment:
| Q |
16 |
acaacacagtcaattaatcatttaatgtcattttgtaagtagtaagtgttaaactataatgtttgatttcattaccataagttttgtaa-gattaactta |
114 |
Q |
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| T |
45965680 |
acaacacagtcaattaatcatttaatgtcattttgcaactagta-gtgttaaactacaatgtatgattccattaccataagttttgtaaagattaactta |
45965778 |
T |
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| Q |
115 |
agattgtatcacaatgcatggctaaacataattaatcacacaattttttgtgataaatgtaaaccaacctcaacttgatagtacaatttgccatcatcag |
214 |
Q |
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| T |
45965779 |
agatcgtatcacaatgcatggctaaacataattaatcacacaattttttgtgataaatgtaaaccaacctcaacttgatagtacaatttgccatcatcag |
45965878 |
T |
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| Q |
215 |
caattctctgagaagtggagagaatattagattcacgtttaacaccaagtctagtggacataaactcagtaagatactgatcaagaactttctttccagc |
314 |
Q |
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| T |
45965879 |
caattctctgagaagtggagagaatattagattcacgtttaacaccaagtctagtggacataaactcagtaagatactgatcaagaactttctttccagc |
45965978 |
T |
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| Q |
315 |
ttgttgaggcgaacccaagtcttgaacagtcttgaattttgaggaagaaggcgaagaaacttcaacagatatattttcatcaagaatataaggatccctg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965979 |
ttgttgaggcgaacccaagtcttgaacagtcttgaattttgaggaagaaggcgaagaaacttcaacagatatattttcatcaagaatataaggatccctg |
45966078 |
T |
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| Q |
415 |
aagaaaatatcagcaccagcacc |
437 |
Q |
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| T |
45966079 |
aagaaaatatcagcaccagcacc |
45966101 |
T |
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