View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5835_low_5 (Length: 380)
Name: NF5835_low_5
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5835_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 42661994 - 42662346
Alignment:
| Q |
18 |
attggagtagcacgttgacaatttgcaccaatgcgtctctcttcctcgacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatga |
117 |
Q |
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| T |
42661994 |
attggagtagcacgttgacaatttccaacaatgcgtctctcttcctcaacaatatcattattagatgtagaatcagcatcatcattatcaacaatcatga |
42662093 |
T |
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| Q |
118 |
aatgatcaagcattctttgaacacaatcaatatcatggattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaa |
217 |
Q |
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| T |
42662094 |
aatgatcaagcattctttgaacacaatcaatatcatggattgtctccattgagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaa |
42662193 |
T |
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| Q |
218 |
ttgaaaaccaattcttttctccaagcttgcacaacaacaagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662194 |
ttgaaaaccaattcttttctccaagcttgcacaacaacaagagcttgcatataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgtt |
42662293 |
T |
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| Q |
318 |
acacccttttcatttggaagcaactcaactatttcttcaatcagattcctttg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662294 |
acacccttttcatttggaagcaactcaactatttcttcaatcagattcctttg |
42662346 |
T |
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