View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5835_low_9 (Length: 235)
Name: NF5835_low_9
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5835_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34260515 - 34260296
Alignment:
| Q |
1 |
tgtttaattacttcataattccaaatatttcattacaaaagcaacaaattattaagcttagagtcaacaagtctagattttattttgactcagtcaacaa |
100 |
Q |
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| T |
34260515 |
tgtttaattacttcataattccaaatatttcattacaaaagcaacaaatta---agcttagagtcaacaagtctagattttattttgactcagtcaacaa |
34260419 |
T |
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| Q |
101 |
atctaattnnnnnnncacacattctctaatttattcatttctattaatctcaattagccggcaaaagcaggcttagccggcagtgtaaaaagagtgaaag |
200 |
Q |
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| T |
34260418 |
atctaattaaaaaaacacagattctctaatttattcatttctattaatctcaattagccggcaaaagcaggcttagccggcagtgtaaaaagagtgaaag |
34260319 |
T |
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| Q |
201 |
catcaacttaatcactgataatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34260318 |
catcaacttaatcactgataatt |
34260296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 34243839 - 34243774
Alignment:
| Q |
148 |
tctcaattagccggcaaaagcaggcttagccggcagtgtaaaaagagtgaaagcatcaacttaatc |
213 |
Q |
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| T |
34243839 |
tctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatc |
34243774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 34244091 - 34244045
Alignment:
| Q |
3 |
tttaattacttcataattccaaatatttcattacaaaagcaacaaat |
49 |
Q |
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|||||||||||||| |||||||||||||| | ||||||||||||||| |
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| T |
34244091 |
tttaattacttcatgattccaaatatttcttaacaaaagcaacaaat |
34244045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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