View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5836-Insertion-1 (Length: 1109)

Name: NF5836-Insertion-1
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5836-Insertion-1
NF5836-Insertion-1
[»] chr4 (3 HSPs)
chr4 (9-1031)||(53556814-53557843)
chr4 (70-153)||(40253993-40254076)
chr4 (74-154)||(21174544-21174624)
[»] chr1 (5 HSPs)
chr1 (718-866)||(4685341-4685489)
chr1 (285-363)||(4685705-4685783)
chr1 (71-153)||(4686089-4686171)
chr1 (71-128)||(4609852-4609909)
chr1 (781-857)||(4612012-4612088)
[»] chr5 (3 HSPs)
chr5 (730-857)||(5113168-5113295)
chr5 (308-411)||(5113496-5113599)
chr5 (89-126)||(2591593-2591630)
[»] chr2 (1 HSPs)
chr2 (726-857)||(40820104-40820235)
[»] chr3 (4 HSPs)
chr3 (82-132)||(20740350-20740400)
chr3 (82-131)||(20732614-20732663)
chr3 (305-363)||(47846787-47846845)
chr3 (791-860)||(47847050-47847119)
[»] chr7 (3 HSPs)
chr7 (736-863)||(41208793-41208920)
chr7 (98-141)||(45675812-45675855)
chr7 (85-132)||(28944890-28944937)
[»] chr6 (1 HSPs)
chr6 (86-121)||(3616988-3617023)


Alignment Details
Target: chr4 (Bit Score: 799; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 9 - 1031
Target Start/End: Complemental strand, 53557843 - 53556814
Alignment:
Q  9 ttgtgtccttttggttcatcaagctgttgttgatatttgactgttttcgctttccgagtaatttcttcttcaatcttgtgttccaatagttttttatgtc 108  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557843 ttgtgtccttttggttcatcaagcagttgtttatattcgactgttttcgctttccgagtaatttcttcttcaatcttgtgttccaatagttttttatgtc 53557744  T
Q  109 attgtctgttcttccaggtaactgagcagcaataatggaccacctatagttatatagatgaaattaatttaattagttgagaagaaaggattctaacatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  53557743 attgtctgttcttccaggtaactgagcagcaataatggaccacctatagttatatagatacaattaatttaattagttgagaagaaaggattctaacatg 53557644  T
Q  209 gtgagattctagtgacaaagaaaaaagacaaacagtagtatgttgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557643 gtgagattctagtgacaaagaaaaaagacaaacagtagtatgttgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaa 53557544  T
Q  309 ggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatct 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557543 ggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatct 53557444  T
Q  409 cttgagccctgtgaattttttgtaattatcccattaattagtttgcactaatccaagattactattataatcaaaatagtttcaagtttccatatactac 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557443 cttgagccctgtgaattttttgtaattatcccattaattagtttgcactaaaccaagattactattataatcaaaatagtttcaagtttccatatactac 53557344  T
Q  509 aaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaaacccagatgaaaaaagtac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53557343 aaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaaactcagatgaaaaaagtac 53557244  T
Q  609 aagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacatacatatatataatctaagaagtactagtaattacaaaaattaagnn 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||   ||||||||||||      
T  53557243 aagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacataca----tataatctaagaagtactagta---acaaaaattaagaa 53557151  T
Q  709 nnnnnntatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagacc 808  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557150 aaaaaatatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagacc 53557051  T
Q  809 aaggtcctttcttcacgttagccttgtcacaacatggagctctacccatcttttttgtattgttaagannnnnnnnnnnnnnnnngaaattaggtttaa- 907  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||                 ||||||||||||||     
T  53557050 aaggtcctttcttcacgttagccttgtcacagcatggagctctacccatcttttttgtattattaagatctctctctctctctctgaaattaggtttaat 53556951  T
Q  908 ttctct-cttga---gatgatgatgatggctttgt-agattgttggg-aactacttggaaggaagag-atgatttataggt-aga--gatggctgatgtg 997  Q
    |||||| |||||   |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||   ||||||||||||    
T  53556950 ttctctccttgagatgatgatgatgatggctttgtaagattgttgggaaactacttggaaggaagagaatgatttataggtaagaagaatggctgatgtg 53556851  T
Q  998 atgct--aaaggacaaaaagtc-tgcacacctcaccc 1031  Q
    |||||  ||||||||||||||| ||||||||||||||    
T  53556850 atgcttaaaaggacaaaaagtcttgcacacctcaccc 53556814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 40253993 - 40254076
Alignment:
Q  70 tttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 153  Q
    ||||||||||||  |||||||||||||||| ||||| ||||| || |||| ||| ||||| || || || ||||||||||||||    
T  40253993 tttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattgcgctgctataatggaccacct 40254076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 21174624 - 21174544
Alignment:
Q  74 ttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccaccta 154  Q
    ||||||||  |||||||||||||||| || || ||||||||||| || || ||||| ||||| || ||||| |||||||||    
T  21174624 ttcttcaactttgtgttccaatagttcttgatatcattgtctgtcctacctggtaattgagctgctataattgaccaccta 21174544  T

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Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 718 - 866
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
Q  718 ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt 817  Q
    |||||||||||||| || ||||||||||| || || ||||| |||| |  ||| ||||||||||||||| ||| ||||||||| |||||||| || ||||    
T  4685489 ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt 4685390  T
Q  818 tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt 866  Q
    |||||||||| || ||||||||||| |||||||||||||| ||| ||||    
T  4685389 tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt 4685341  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 4685783 - 4685705
Alignment:
Q  285 acctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg 363  Q
    ||||||||||||| || ||||||||||||||||| ||||| ||||||||||| |  || ||||||||||||| ||||||    
T  4685783 acctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg 4685705  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 4686171 - 4686089
Alignment:
Q  71 ttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 153  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||||||    
T  4686171 ttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 4686089  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 4609852 - 4609909
Alignment:
Q  71 ttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggta 128  Q
    |||||||||| | ||||||||||||||||||| |  |||||||||||||| |||||||    
T  4609852 ttcttcttcagttttgtgttccaatagtttttcacatcattgtctgttctgccaggta 4609909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 781 - 857
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
Q  781 ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat 857  Q
    |||||||| |||||||| ||||||||||| |||||| |||| || ||  | ||||||||||| |||||||| |||||    
T  4612012 ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat 4612088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 730 - 857
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
Q  730 tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag 829  Q
    ||||| ||||||||||||||||| ||||| ||||||  ||| |||||||| |||||| |||||||||||||||| ||||| || ||||| || || || |    
T  5113295 tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg 5113196  T
Q  830 ccttgtcacaacatggagctctacccat 857  Q
    | |||||||| || |||||||| |||||    
T  5113195 ctttgtcacagcaaggagctcttcccat 5113168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 411
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
Q  308 aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc 407  Q
    ||||||||||| |||| |||||||||||| |  || ||||||||||| ||||| ||||| |  ||||||||||| ||||| |  || || || |||||||    
T  5113599 aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc 5113500  T
Q  408 tctt 411  Q
    ||||    
T  5113499 tctt 5113496  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 2591630 - 2591593
Alignment:
Q  89 ttccaatagttttttatgtcattgtctgttcttccagg 126  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  2591630 ttccaatagttttttatttcattgtctgttctaccagg 2591593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 726 - 857
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
Q  726 tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg 825  Q
    |||||||||||||| |||||||||||| ||||||||||   |||| || ||   ||||||  | | ||||||||| || ||||| ||||||||||||||     
T  40820104 tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca 40820203  T
Q  826 ttagccttgtcacaacatggagctctacccat 857  Q
    || || |||||||| || |||||||| |||||    
T  40820204 tttgctttgtcacagcaaggagctcttcccat 40820235  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 20740350 - 20740400
Alignment:
Q  82 tcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactg 132  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  20740350 tcttgtgttccagtagttctttatttcattgtctgttcttccaggtaactg 20740400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 20732614 - 20732663
Alignment:
Q  82 tcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaact 131  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  20732614 tcttgtgttccagtagttctttatttcattgtctgttcttccaggtaact 20732663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
Q  305 taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg 363  Q
    |||||||||||||||||||||||||||||||| || || ||||| || ||||| |||||    
T  47846787 taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg 47846845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 791 - 860
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
Q  791 catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt 860  Q
    |||||||||| || ||||||||||||||||||||||| || |||||||| || || || || ||||||||    
T  47847050 catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt 47847119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 736 - 863
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
Q  736 agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt 835  Q
    |||| |||||| |||||||||||||||| | | || |||||    || ||| | |||||||||||||||||||| || |||||||| || ||||| ||||    
T  41208793 agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt 41208892  T
Q  836 cacaacatggagctctacccatcttttt 863  Q
    |||| || |||| ||| ||||| |||||    
T  41208893 cacagcaaggagatcttcccattttttt 41208920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 45675812 - 45675855
Alignment:
Q  98 ttttttatgtcattgtctgttcttccaggtaactgagcagcaat 141  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  45675812 ttttttatctcattgtctgttcttccaggtaactgagctgcaat 45675855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 28944890 - 28944937
Alignment:
Q  85 tgtgttccaatagttttttatgtcattgtctgttcttccaggtaactg 132  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||||||||    
T  28944890 tgtgttccaaaagttctttatctcattgtctgttcttccgggtaactg 28944937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 3617023 - 3616988
Alignment:
Q  86 gtgttccaatagttttttatgtcattgtctgttctt 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  3617023 gtgttccaatagttttttatgtcattgtctgttctt 3616988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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