View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5836-Insertion-2 (Length: 1045)

Name: NF5836-Insertion-2
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5836-Insertion-2
NF5836-Insertion-2
[»] chr3 (3 HSPs)
chr3 (9-804)||(37386007-37386805)
chr3 (864-1032)||(37385820-37385999)
chr3 (413-474)||(40344921-40344982)
[»] chr4 (1 HSPs)
chr4 (409-478)||(30615210-30615279)
[»] chr1 (1 HSPs)
chr1 (409-470)||(28165118-28165179)
[»] chr7 (1 HSPs)
chr7 (412-467)||(20949169-20949224)
[»] chr2 (2 HSPs)
chr2 (411-478)||(19285976-19286043)
chr2 (412-467)||(38214210-38214265)
[»] chr8 (2 HSPs)
chr8 (413-467)||(2520129-2520183)
chr8 (409-466)||(40314309-40314366)


Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 9 - 804
Target Start/End: Complemental strand, 37386805 - 37386007
Alignment:
Q  9 aaaagcacattactctcaccgtataggctagctaggctctcaaaaacataattatgattcccaacaactcattcacctaaaaaccaagattccattaata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37386805 aaaagcacattactctcaccgtataggctagctaggctctcaaaaacataattatgattcccaacaactcattcacctaaaaaccaagattccattaata 37386706  T
Q  109 tttcaaacatttaaccaagttatattggtcaataagctctggtaaattaatgatggaagtgatgggaagatatatcgaattaattgcaacaactgttact 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37386705 tttcaaacatttaaccaagttatattggtcaatgagctctggtaaattaatgatggaagtgatgggaagatatatcgaattaattgcaacaactgttact 37386606  T
Q  209 cggattttagttaggagtatctctctatcaatggatcattcctattaaaactaaacttaataaataagggaagggaaatatgaagtagttcatcacatcg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37386605 cggattttagttaggagtatctctctatcaatggatcattcctattaaaactaaactttataaataagggaagggaaatatgaagtagttcatcacatcg 37386506  T
Q  309 aannnnnnnaaaatataataattgattctataatgtcgcaacttttaagttgtatcaattgtttagaagacttttatacttctcatttaatggttattag 408  Q
    ||       ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  37386505 aatttttttaaaatataataattgattctataatgtcgcaacttctaagttgtattaattgtttagaagacttttatacttttcatttaatggttattag 37386406  T
Q  409 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaaca--atatatatgaatgttttctgttttccttct 506  Q
     |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  37386405 ggatgtatttaatatttcacagttttttatagagacgtatttataaaaatatttaaaaaattgcaacaatatatatatgaatgttttctgtttttcttct 37386306  T
Q  507 taataaagataggagagagtattcacaaccgtttaacaatgattagtctatcaaagagttgttgagcatgaaaagtaaccat-aaatattttgttgacac 605  Q
    ||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  37386305 taataaagacatgagagagtatttataaccgtttaacaatgattagtctatcaaagagttgttgagcatgaaaagtaatcataaaatattttgttgacac 37386206  T
Q  606 attttttctaaacctacaccttatactactgattttgtattaagtgtttctccaccttgaaatccgactaacactaaatatgagggtactatataaagtg 705  Q
    |||||| ||||| ||||||| |||||||||| ||||||||||| ||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  37386205 atttttcctaaatctacaccatatactactgtttttgtattaattgtttctccgcctcgaaatccgactaatactaaatctgagggtactatataaagtg 37386106  T
Q  706 ttggaattgtgtgtccaaatatcattgttaggacaaattatttattctcaactatatatacaaaacacaagtcaaatttaaagagaaaatatatttgaa 804  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37386105 ttggatttgtgtgtccaaatataattgttaggacaaattatttattctcaactatatatgcaaaacacaagtcaaatttaaagagaaaatatatttgaa 37386007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 864 - 1032
Target Start/End: Complemental strand, 37385999 - 37385820
Alignment:
Q  864 atgatgtcaaaaattaaatgttcaa-taacacaatttaatttctctaaataaatagtaaaaaacacaatccaatt--aattataaccacttgctcaa-gt 959  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||| | ||| |   || ||||||||||||||  |||||||||||||||||||| ||    
T  37385999 atgatgtcaaaaattaaatgttcaaataacacaatccaatttctctataaaaaaaaataacaacacaatccaatttaaattataaccacttgctcaaagt 37385900  T
Q  960 gtccgagagtctctc----actgcttagatcgatca-ccagatattttcg--ttttcaaagcagtatttattccatcaca 1032  Q
    |||||||||||||||    |||||| |||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  37385899 gtccgagagtctctctctcactgctgagatcgatcaaccagatattttcggtttttcaaagcagtatttattccatcaca 37385820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 413 - 474
Target Start/End: Complemental strand, 40344982 - 40344921
Alignment:
Q  413 gtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaa 474  Q
    |||||||||| |||||| ||||||||| ||   |||||||||||||||| ||||| ||||||    
T  40344982 gtatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaa 40344921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 409 - 478
Target Start/End: Original strand, 30615210 - 30615279
Alignment:
Q  409 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaat 478  Q
    ||||||||||||||||||| | |||||||||  |  ||||||||||||||||||||||| || |||||||    
T  30615210 agatgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagttacaacaat 30615279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 28165179 - 28165118
Alignment:
Q  409 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaatt 470  Q
    ||||||||||||||||||||| ||||||||| ||   |||||||||||||||| ||||||||    
T  28165179 agatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaatt 28165118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 20949169 - 20949224
Alignment:
Q  412 tgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa 467  Q
    |||||||||||||||||| ||||||||  ||   ||||||||||||||||||||||    
T  20949169 tgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaa 20949224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 478
Target Start/End: Original strand, 19285976 - 19286043
Alignment:
Q  411 atgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaaattgcaacaat 478  Q
    |||||||||||| ||||||  ||| ||||||||  ||||||||||| |||||||||| ||| ||||||    
T  19285976 atgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaagttgtaacaat 19286043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 38214210 - 38214265
Alignment:
Q  412 tgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa 467  Q
    |||||||||||||||||| ||||||||  |||  |||||||||||||||| |||||    
T  38214210 tgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa 38214265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 2520183 - 2520129
Alignment:
Q  413 gtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaaa 467  Q
    ||||||||||||||||| ||||||||  |||  |||||||||||||||| |||||    
T  2520183 gtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaa 2520129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 40314309 - 40314366
Alignment:
Q  409 agatgtatttaatgtttcacagttttttatagggacgtatttgtaaaaatatttaaaa 466  Q
    ||||||||||||||||||| | ||||||||   ||  |||||||||||||||||||||    
T  40314309 agatgtatttaatgtttcataattttttatgaagatatatttgtaaaaatatttaaaa 40314366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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