View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5836-Insertion-5 (Length: 570)
Name: NF5836-Insertion-5
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836-Insertion-5 |
 | |
|
| [»] chr4 (13 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Original strand, 38247664 - 38248224
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38247664 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
38247763 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38247764 |
ttcctacaatat--aggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
38247861 |
T |
|
| Q |
208 |
caaatatcacaaaactagtaaatgtaaaaaatacagtggttacttcttgatcaaaagtataagaaacactgatagtactaaattgcaaatatatgatact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38247862 |
caaatatcacaaaactagtaaatgtaaaaaatacagtggttacttcttgatcaaaagtataagaaacactgatagtactaaattgcaaatatatgatgct |
38247961 |
T |
|
| Q |
308 |
attctcttctttgttaaacatttgctaccctcgattgaaaactattacatgaacaaatagaggtgattatatatgataaaaaatgtcaatattgtctcgg |
407 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38247962 |
attctcttctttgttaaacattttctacccttgattgaaaactattacatgaacaaatagaggtgattatatatgataaaaaatgtcaatattgtctcgg |
38248061 |
T |
|
| Q |
408 |
tgtccgacactacgacacatctttaatctcaagtatcaatgctatattaggtgtaaatatagaatccctcttaaggggcagaatcatgattgattagacc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38248062 |
tgtccgacactacgacacatctttaatctcaagtatcaatgctatattaggtgtaaatatagaatccctcttaaggggcagaatcatgattgattatacc |
38248161 |
T |
|
| Q |
508 |
cttccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattga |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38248162 |
cttccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattga |
38248224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 38252695 - 38253199
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38252695 |
actccggtgtgctccttggtgctgttgtagttagactctagagtcaaagtttcaccatcaattatcttaacagaacctggtttaggataacatgtggaca |
38252794 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||||| || | || ||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252795 |
ttcctacaatgta--gcctgattcatttcctgcttcacttccctttccgtaatttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
38252892 |
T |
|
| Q |
208 |
caaatatcacaaaactagtaaatgtaaaaaatacagtggtta-cttcttgatcaaaagtataagaaacactgatagtactaaattgcaaatatatgatac |
306 |
Q |
| |
|
||||| ||||||||| || ||| || ||| |||| || ||| ||||| | ||||| |||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
38252893 |
caaatttcacaaaacaagctaatatacaaa-tacaatgtttaacttctgggtcaaatgtataagaaacatcgatggtactaaattgcaaatatatgacac |
38252991 |
T |
|
| Q |
307 |
tattctcttctttgttaaacatttgctaccctcgattgaaaactattacatgaacaaatagaggtgattatatatgataaaaaatgtcaatattgtctcg |
406 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38252992 |
cattctcttctttattaaacatttgttaccctctatcgaaaactattacatgatcaaatagaggtgattatatatgataaaaaatgccaatattgtctcg |
38253091 |
T |
|
| Q |
407 |
gtgtccgacac-tacgacacatctttaatctcaagtatcaatgctatattaggtgtaaatatagaatccctcttaaggggcagaatcatgattgattaga |
505 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
38253092 |
gtgtccgacacgtgttacacatctttaatctcaagtgtcggtgctatattgagtgtaaatatggaatccctcttaagaggcagaatcattattgattaga |
38253191 |
T |
|
| Q |
506 |
cccttcca |
513 |
Q |
| |
|
|||||||| |
|
|
| T |
38253192 |
cccttcca |
38253199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 38213298 - 38213510
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
||||||||||||||| || || || ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38213298 |
actccagtgtgctccttgctgttgctgtagttagacactagagtcaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
38213397 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38213398 |
ttcctaca--atatagtttgcctcatttcctgcttcatttccagttccataacttggtatagaagaacatataacccttccatcctgaaaacataatcca |
38213495 |
T |
|
| Q |
208 |
caaatatcacaaaac |
222 |
Q |
| |
|
|| || ||| ||||| |
|
|
| T |
38213496 |
catatttcagaaaac |
38213510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 38237202 - 38237414
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38237202 |
actccggtgtgctccttggtgctgttgtagttagactctagagttaaagtttcaccatcaataatcttgacagaacctggtttaggataacaagtggaca |
38237301 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38237302 |
ttcctacaatgtat--cccgcttcatttcctgcttcgcttccatttccataacttggtatagaggaacatataacccttccatcctgaaaacataatcca |
38237399 |
T |
|
| Q |
208 |
caaatatcacaaaac |
222 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
38237400 |
caaatttcacaaaac |
38237414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 38225783 - 38225995
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38225783 |
actccagtgtgctccttggtgctgctgtagttagacactagagttaaagtttcaccatcaactatcttgacagaacctggtttaggataacatgtggaca |
38225882 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||||| || | || |||||| || ||||||||||| |||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
38225883 |
ttcctacaatgta--gcctgtctcattcccagcttcatttccatttccgtaacttggtatagaggaacatataactctgccatcctgaaaacatgatcca |
38225980 |
T |
|
| Q |
208 |
caaatatcacaaaac |
222 |
Q |
| |
|
|| || || |||||| |
|
|
| T |
38225981 |
catatttcgcaaaac |
38225995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 38242424 - 38242614
Alignment:
| Q |
30 |
tgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaatatataggttgcc |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
38242424 |
tgttgtagttagactctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtat--cccact |
38242521 |
T |
|
| Q |
130 |
tcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatccacaaatatcacaaaac |
222 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
38242522 |
tcatttcctgcttcgcttccatttccataacttggtttggaagaacatataaccctcccatcctgaaaacataatccatcaatttcacaaaac |
38242614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 38219738 - 38219898
Alignment:
| Q |
50 |
gttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaatatataggttgcctcatttcctgcttcatttcc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | || ||||||||| ||||| ||||| |
|
|
| T |
38219738 |
gttaaagtttcaccatcaataatcttgatagaacctggtttaggataacatgtggacattcctacaatgta--gcctgtctcatttccagcttcgtttcc |
38219835 |
T |
|
| Q |
150 |
ggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatccacaaat |
212 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
38219836 |
atttccatatcttggtattgaagagcatataaccctctcatcctgaaaacataatccataaat |
38219898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 516 - 570
Target Start/End: Original strand, 38253323 - 38253377
Alignment:
| Q |
516 |
ttgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattga |
570 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
38253323 |
ttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttga |
38253377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 38242725 - 38242785
Alignment:
| Q |
321 |
ttaaacatttgctaccctcgattgaaaactattacatgaacaaatagaggtgattatatat |
381 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
38242725 |
ttaaacatttgctaacctcaatcgaaaactattacatgaacaaatagaagggattatatat |
38242785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 564
Target Start/End: Original strand, 38242976 - 38243018
Alignment:
| Q |
522 |
tgggagacttgtccttttcacatgaacacacccatttccctcc |
564 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
38242976 |
tgggagacttgtcctcttcacatgaacacacccattttcctcc |
38243018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 38214072 - 38214120
Alignment:
| Q |
511 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttc |
559 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
38214072 |
ccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttc |
38214120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 38226451 - 38226499
Alignment:
| Q |
511 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttc |
559 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
38226451 |
ccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttc |
38226499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 38226069 - 38226122
Alignment:
| Q |
326 |
catttgctaccctcgattgaaaactattacatgaacaaatagaggtgattatat |
379 |
Q |
| |
|
|||||| || |||| |||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
38226069 |
catttgttagcctcaattgaaaactatcacatgatcaaatagaagtgattatat |
38226122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 17453610 - 17453822
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||| || | |||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
17453610 |
actccagtatgctctttggtgttgttgtagttagattcatgagttaaaatttcaccatcaattatcttgacagaacctggtttaggataacaagtagaca |
17453709 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17453710 |
ttcctacaatgtaccc--tgcctcatttcctgcttcatttccatgtccataacttggtacagaagaacatataactctcccatcctgaaaacataatcca |
17453807 |
T |
|
| Q |
208 |
caaatatcacaaaac |
222 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
17453808 |
caaatttcacaaaac |
17453822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 17432724 - 17432914
Alignment:
| Q |
8 |
actccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggaca |
107 |
Q |
| |
|
||||||||||| || ||||| || |||||||||| ||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
17432724 |
actccagtgtggtctttggtgttggtgtagttagattctagagttaaaatttcaccatcatttatcttgacagaacctggtttaggataacaagtagaca |
17432823 |
T |
|
| Q |
108 |
ttcctacaatatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatcca |
207 |
Q |
| |
|
|||||||||| || ||||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17432824 |
ttcctacaatgta--------------ccctgcctcatttccattgccataacttggtgtagaagaacatataaccctcccatcctgaaaacataatcca |
17432909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 511 - 565
Target Start/End: Original strand, 17433468 - 17433522
Alignment:
| Q |
511 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcct |
565 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| |||||| |||||| |
|
|
| T |
17433468 |
ccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcct |
17433522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 511 - 565
Target Start/End: Original strand, 17454547 - 17454601
Alignment:
| Q |
511 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcct |
565 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
17454547 |
ccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcct |
17454601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 49137 - 48989
Alignment:
| Q |
43 |
ctctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaatatataggttgcctcatttcctgctt |
142 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||| ||||||||||| ||||||||| |||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
49137 |
ctctagagttaaagtttcaccattaaatatcttgatagaacctggttgaggataacaagtggacattcctacaacatatccttt--ttcatttcctgctt |
49040 |
T |
|
| Q |
143 |
catttccggttccataacttggtatagaagaacatataaccctcccatcct |
193 |
Q |
| |
|
| ||||| ||||||| ||||| | ||| |||||| ||| ||||||||| |
|
|
| T |
49039 |
cctttccatttccatattttggttttgaattacatattaccttcccatcct |
48989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 11475327 - 11475240
Alignment:
| Q |
33 |
tgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaatata |
120 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
11475327 |
tgtagttactctctaatgttaaagtctcaccatcaaatatcttgatagaacctggtttagggtaacatgttgacattcctacaatata |
11475240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 11486560 - 11486400
Alignment:
| Q |
33 |
tgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaatatataggttgcctca |
132 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||| ||||||| |||| || |||| |
|
|
| T |
11486560 |
tgtagttagtctctaatgttaaattttcaccatcaaatatcttgatagaacctggtttagggtaacatgttgacatgcctacaacatatccttt--ctca |
11486463 |
T |
|
| Q |
133 |
tttcctgcttcatttccggttccataacttggtatagaagaacatataaccctcccatcctga |
195 |
Q |
| |
|
||||||||| ||||| ||||||| |||| || |||| ||||||||| || ||||||||| |
|
|
| T |
11486462 |
tttcctgctctctttccttttccatattttgggattgaagtacatataactcttccatcctga |
11486400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 11480744 - 11480655
Alignment:
| Q |
27 |
tgctgttgtagttagactctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaa |
116 |
Q |
| |
|
||||| ||| ||||| ||||| |||||| |||||||||||| ||||||| |||||||||| |||| ||||| || ||||||||||||| |
|
|
| T |
11480744 |
tgctgctgtggttagcctctaaagttaaaatttcaccatcaaatatcttgatagaacctggtatagggtaacaagttgacattcctacaa |
11480655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 11463422 - 11463351
Alignment:
| Q |
45 |
ctagggttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaa |
116 |
Q |
| |
|
|||| |||||| |||||||||||| | ||||| ||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
11463422 |
ctagtgttaaaatttcaccatcaaataacttgatagaacctggtttagggtaacaagttgacattcctacaa |
11463351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 21547947 - 21547882
Alignment:
| Q |
51 |
ttaaagtttcaccatcaataatcttgacagaacctggtttaggataacatgtggacattcctacaa |
116 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
21547947 |
ttaaagtttcaccattaagtatcttgatagaacctggttgaggataacaagtggtcattcctacaa |
21547882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University