View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5836-Insertion-6 (Length: 554)
Name: NF5836-Insertion-6
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836-Insertion-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 554
Target Start/End: Original strand, 46736718 - 46737252
Alignment:
| Q |
8 |
aagtaagtcattgtcgtttatggaaatatcggagttgttgtctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtc |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46736718 |
aagtaagtcattgtcgtctatggaaatatcggagttgttgtctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtc |
46736817 |
T |
|
| Q |
108 |
aatttactagttgacttcatatatattctatattagatattgaaaaagatattgaactagtattgtgttgcttgctggtattgtgagtcattgatttatg |
207 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46736818 |
aatttactggttgacttcatatatattttatattagat------------attgaactagtattgtgttgcttgctggtattgtgagtcattgatttatg |
46736905 |
T |
|
| Q |
208 |
ggatactcaatgtgtcgtctatgcattcatgactcatgagcattgatatctcttgttttgttgtttgagagattggatgtgtgctatgggataaaaggag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46736906 |
ggatactcaatgtgtcgtctatgcattcatgactcatgagcattgatatctcttgttttgttgtttgagagattggatgtgtgctatgggataaaaggag |
46737005 |
T |
|
| Q |
308 |
caattgttttttgaacagaacgtggatgaatgctatatcaacaggggatgttgttgctcatagaaaaccatgtatggatcatgatcacattccatattaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46737006 |
caattgttttttgaacagaacgtggatgaatgctatatcaacaggggatgttgttgctcatagaaaaccatgtatggatcatgatcgcattccatattaa |
46737105 |
T |
|
| Q |
408 |
tgaaggcatctgcactaccattagtttcacggtacacatgacacactctaacttcacaatctgtttgaagtatccgacgaatatgttgcactagcctcca |
507 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46737106 |
tgaaggcatctgcacaaccattagcttcacggtacacatgacacactctaacttcacaatctgtttgaagtatccgacgaatatgttgcactagcctcca |
46737205 |
T |
|
| Q |
508 |
ccaatctgtcaacactgtattaggatcaagaatattttcagctacca |
554 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46737206 |
ccaatctgtctacactgtattaggatcaagaatattttcagctacca |
46737252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University