View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_high_1 (Length: 607)
Name: NF5836_high_1
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 4058082 - 4057780
Alignment:
| Q |
1 |
acactacagaaccccaaccatcatcaacatgctcaatccaaacataatcccttctaatcgcatcagattcgcaacctgaaaacccaaagaacacaaccat |
100 |
Q |
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| T |
4058082 |
acactgcaggaccccaaccatcatcaacatgctcaatccaaacataatcccttctaatcgcatcagattcgcaacctgaaaacccaaagaacacaaccat |
4057983 |
T |
|
| Q |
101 |
cagaaccaaaataataattgggaagcttgagtgtttctagaagggtaggattatcattttgcnnnnnnnaaaatgcttgtagtttggagcccaaacaaag |
200 |
Q |
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| T |
4057982 |
cagaaccaaaataataattgggaagcttgagtgtttctagaagggtaagattatcattttgctttttttaaaatgcttgcagtttggagcccaaacaaag |
4057883 |
T |
|
| Q |
201 |
acaatccggtaaaaatgcagatcaaaatgctagggttgtgctagggttttgttgaagattttattgcatttgtattattaagataagatgagcatgagct |
300 |
Q |
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| T |
4057882 |
acaatccggtaaaaatgcagatcaaaatgctagggttgtgctagggttttgttgaagattttattgcatttgtattattaagataagatgagcatgagct |
4057783 |
T |
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| Q |
301 |
atc |
303 |
Q |
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| T |
4057782 |
atc |
4057780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 373 - 568
Target Start/End: Complemental strand, 4057709 - 4057514
Alignment:
| Q |
373 |
cattacaaagtaaacttgagtataaagaatacatactaannnnnnnacacagtcattcgatcatattacattataatatttccctaaaataaaagattac |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4057709 |
cattacaaagtaaacttgagtataaagaatacatactaatttttttacacagtcattcgatcatattacattataatatttccctaaaataaaagattac |
4057610 |
T |
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| Q |
473 |
atcataatatctcactaatcactttattgtatgccatttttaaatatttcaattaatatcgtgatgaaatttgatgataaaataattcttttcata |
568 |
Q |
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| T |
4057609 |
atcataatatctcactaatcactttattgtatgccatttttaaatatttcaattaatatcgtgatgaaatttgatgataaaataattcttttcata |
4057514 |
T |
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