View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_high_5 (Length: 545)
Name: NF5836_high_5
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_high_5 |
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| [»] scaffold0405 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 39 - 445
Target Start/End: Complemental strand, 9695794 - 9695388
Alignment:
| Q |
39 |
tcacttcagacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaa |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9695794 |
tcacttcagacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacgagatataaa |
9695695 |
T |
|
| Q |
139 |
tccaagtaaaatcagaacacggaaaaatcagagtaacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcc |
238 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9695694 |
tccaagtaaaatcagaacacggaaaaatcaaagtcacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgttttctcatactcc |
9695595 |
T |
|
| Q |
239 |
tccttcaatttatcagccttagcaatgaatggagccttatcctaaaatacacaaatcacaaaaacgactttaaaatcaaaactaagagaattagattaat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9695594 |
tccttcaatttatcagccttagcaatgaatggagccttatcctaaaatacacaaatcacaaaaacgactttaaaatcaaaactaagagaattagattaat |
9695495 |
T |
|
| Q |
339 |
ttccttcggtgaaacagaagcaaaattctcacagcatcagacagagctttccattcctttccaccggctttcccaacctgattcaaattcaccgtaaatc |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9695494 |
ttccttcggtgaaacagaagcaaaattctcacagcatcagacagagctttccattcctttccaccggctttcccaacctgattcaaattcaccgtaaatc |
9695395 |
T |
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| Q |
439 |
acgttag |
445 |
Q |
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||||||| |
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| T |
9695394 |
acgttag |
9695388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 53 - 303
Target Start/End: Original strand, 30439777 - 30440029
Alignment:
| Q |
53 |
gacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatccaagtaaaatca |
152 |
Q |
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| T |
30439777 |
gacttatcaaatccttcttcctctgaagcattattctcggtctaagacatcaaaattagttcaaatcagcaaaaaggtaatataaatccaagtaaaataa |
30439876 |
T |
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| Q |
153 |
gaacacggaaaaatcagagtaacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaatttatc |
252 |
Q |
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||||| |||| ||| ||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| || || || |
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| T |
30439877 |
gaacagtaaaaattcacagtaacagagaagttataaaagtaattacaattcccatattgtacgcaagcattgtctcctcatactcctccttgaacttctc |
30439976 |
T |
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| Q |
253 |
agccttagcaatgaatggagccttatcctaaaatacac--aaatcacaaaaac |
303 |
Q |
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| T |
30439977 |
aaacttagcaatgaatcgagccttatcctaaaatacacataaatcacaaaaac |
30440029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 30440131 - 30440189
Alignment:
| Q |
387 |
ttccattcctttccaccggctttcccaacctgattcaaattcaccgtaaatcacgttag |
445 |
Q |
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| T |
30440131 |
ttccattcctttccaccaactttcccaacctaattcaaattcaccgtaaatcacgttag |
30440189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 43 - 376
Target Start/End: Original strand, 14700 - 15039
Alignment:
| Q |
43 |
ttcagacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatcca |
142 |
Q |
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||||||||| ||||| | |||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||| | ||||||||||| |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctcagtctaagacatcaaaattagttcaaatcagcaaaaagttaatataaatcca |
14799 |
T |
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| Q |
143 |
agtaaaatcagaacacggaaaaatcagagtaacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctcct |
242 |
Q |
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|||||||| ||| || |||| ||| |||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14800 |
agtaaaataagagcagtaaaaattcacagtaacagaaaagttatagaaataattacaattcccatgttgtaagcacgcattgtcttctcatactcctcct |
14899 |
T |
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| Q |
243 |
tcaatttatcagccttagcaatgaatggagccttatcctaaaatacac--aaatcacaaaaacgactttaaaatcaaa--actaa--gagaattagatta |
336 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| || || ||| ||| |||| |
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| T |
14900 |
tcaacttctcagccttagcaatgaatggagccttatcctaaaatacacataaatcacaaaaatgaatttaaaatcaaaacacgaattaagatttatatta |
14999 |
T |
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| Q |
337 |
atttccttcggtgaaacagaagcaaaattctcacagcatc |
376 |
Q |
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|||| |||| |||||||||| | |||||||||||||||| |
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| T |
15000 |
attttcttcagtgaaacagaggtgaaattctcacagcatc |
15039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 15071 - 15111
Alignment:
| Q |
391 |
attcctttccaccggctttcccaacctgattcaaattcacc |
431 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
15071 |
attcttttccaccagctttcccaacctaattcaaattcacc |
15111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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