View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_high_8 (Length: 360)
Name: NF5836_high_8
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 342
Target Start/End: Original strand, 36724252 - 36724464
Alignment:
| Q |
130 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
|
| Q |
230 |
attatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaatatgttttt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36724352 |
attatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgttaacatcacaaagaggagagaaccaatatgttttt |
36724451 |
T |
|
| Q |
330 |
gtaaaaataaagt |
342 |
Q |
| |
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||||||||||||| |
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| T |
36724452 |
gtaaaaataaagt |
36724464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 88 - 330
Target Start/End: Complemental strand, 712314 - 712072
Alignment:
| Q |
88 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
187 |
Q |
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|||||||||||| |||||||||| ||||||| | ||||| |||| |||||| ||| |||||| |||| |||||||| | |||||| || | |||||| |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
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| Q |
188 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcc |
287 |
Q |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccattccaaagtcgtatgaaaagaaactccttcc |
712115 |
T |
|
| Q |
288 |
cctatgtcaacatcacaaagaggagagaaccaatatgtttttg |
330 |
Q |
| |
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| T |
712114 |
cctatgtcaacatcacaaagaggagagaaccaatatgtttttg |
712072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 36723764 - 36723895
Alignment:
| Q |
12 |
atcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagtttt |
111 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||| || |||||||| |
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| T |
36723764 |
atcatcataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagtttt |
36723863 |
T |
|
| Q |
112 |
gaaatctactatgaaataactgtctacaagca |
143 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36723864 |
gaaatctactatgaaataactgtctacaagca |
36723895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 717603 - 717282
Alignment:
| Q |
10 |
acatcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagt |
108 |
Q |
| |
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||||||||||| ||| | || ||| |||||||||| |||| ||||||||||| | || | | ||||||| || || |||||||||||| ||||||| |
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| T |
717603 |
acatcatcataagtgagagatctagcattatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagt |
717504 |
T |
|
| Q |
109 |
tttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcac |
208 |
Q |
| |
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||||||||||||| || ||||| |||||||| || ||||||| |||| |||||||| | ||||| || | | |||||| |||||| ||| | ||| |
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| T |
717503 |
tttgaaatctactttggaataattgtctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttctt |
717404 |
T |
|
| Q |
209 |
aaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaaga |
308 |
Q |
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| ||||||||| |||||| ||||||||||||||||| ||||||||||| |||| |||||| ||| || | |||||||||||| ||||||||||||| |
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| T |
717403 |
agagtctagagctaaatctacattatcaaattgaaggtgtgatgtccacttcaaaatcgtatgtaaaccaactacttcccctatgttaacatcacaaaga |
717304 |
T |
|
| Q |
309 |
ggagagaaccaatatgtttttg |
330 |
Q |
| |
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|||||||||||| || |||||| |
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| T |
717303 |
ggagagaaccaagatttttttg |
717282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 278
Target Start/End: Complemental strand, 14541248 - 14541058
Alignment:
| Q |
88 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
187 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
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| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
|
| Q |
188 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatca |
278 |
Q |
| |
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|| |||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtccactccaaagccgtatgcaaatca |
14541058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 2087537 - 2087632
Alignment:
| Q |
221 |
aaaatctgtattatcaaattgaaggtctgatgtccactccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaa |
320 |
Q |
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||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| |||||| || || ||||||||||||||||||||||||||| |
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| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccattgcaaagttgtatgcaaa----ctgcttctccaatatcaacatcacaaagaggagagaaccaa |
2087632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 36474068 - 36474006
Alignment:
| Q |
258 |
tccaaagccgtatgcaaatcagatgcttcccctatgtcaacatcacaaagaggagagaaccaa |
320 |
Q |
| |
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|||| ||||||||||||| | |||||||||||| ||||||||||||||||| || |||||| |
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| T |
36474068 |
tccagagccgtatgcaaacccattgcttcccctatatcaacatcacaaagaggggaaaaccaa |
36474006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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