View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_11 (Length: 348)
Name: NF5836_low_11
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 43 - 348
Target Start/End: Complemental strand, 2237764 - 2237459
Alignment:
| Q |
43 |
tcaacatataggagttactacgttgggacatcttcactagaagaaggtgtagccattgaagattgctgcatatttcgtggaagtcttgcaaaacttgatg |
142 |
Q |
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| T |
2237764 |
tcaatatataggagttactatgttggaacatcttcactagaagaaggtgcaaccattaaagattgttgcatatttcgtggaagtcttgtaaaacttgatg |
2237665 |
T |
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| Q |
143 |
ctcaaactggtgccatcttatggaaaacctatatgttaccagataataatggaaagataggtgaatatgctggagctgccatttggggaagtagtccttc |
242 |
Q |
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| T |
2237664 |
ctcaaaccggcgacatcttatggaaaacctatatgttaccggataacaacggaaagataggagcatatgctggagctgccatttggggaagtagtccttc |
2237565 |
T |
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| Q |
243 |
cattgatgtttatagaaaacatgtctatattgccactggaaatctctactctgcaccagaaaacatacttgaatgtcaagaaagacaaaataatgaaact |
342 |
Q |
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| T |
2237564 |
cattgatgtttatcgaaaacatgtctatattgccaccggaaatctctactctgccccaaaaaacgtacttgaatgtcaagaaagacaaaataatcaaact |
2237465 |
T |
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| Q |
343 |
gctcct |
348 |
Q |
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||||| |
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| T |
2237464 |
actcct |
2237459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 2260847 - 2260983
Alignment:
| Q |
149 |
ctggtgccatcttatggaaaacctatatgttaccagataataatggaaagataggtgaatatgctggagctgccatttggggaagtagtccttccattga |
248 |
Q |
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|||||||||| ||||||||||| ||||||||||| ||||| ||||| || | |||||||||| |||| | || || |||||||||||||| | ||||| |
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| T |
2260847 |
ctggtgccattttatggaaaacatatatgttacctgataacaatggcaaaagaggtgaatattctggtggagctatatggggaagtagtccaccaattga |
2260946 |
T |
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| Q |
249 |
tgtttatagaaaacatgtctatattgccactggaaat |
285 |
Q |
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| T |
2260947 |
tgcatcaagaaaccatatatacattgccactggaaat |
2260983 |
T |
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