View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5836_low_13 (Length: 310)
Name: NF5836_low_13
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37386244 - 37386007
Alignment:
| Q |
1 |
ttgagcatgaaaagtaaccataaa-tattttgttgacacattttttctaaacctacaccttatactactgattttgtattaagtgtttctccaccttgaa |
99 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||| ||||||||| ||| ||| |
|
|
| T |
37386244 |
ttgagcatgaaaagtaatcataaaatattttgttgacacatttttcctaaatctacaccatatactactgtttttgtattaattgtttctccgcctcgaa |
37386145 |
T |
|
| Q |
100 |
atccgactaacactaaatatgagggtactatataaagtgttggaattgtgtgtccaaatatcattgttaggacaaattatttatgctcaactatatatac |
199 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
37386144 |
atccgactaatactaaatctgagggtactatataaagtgttggatttgtgtgtccaaatataattgttaggacaaattatttattctcaactatatatgc |
37386045 |
T |
|
| Q |
200 |
gaaacacaagtcaaatttaaagagaaaatatatttgaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37386044 |
aaaacacaagtcaaatttaaagagaaaatatatttgaa |
37386007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University