View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_16 (Length: 243)
Name: NF5836_low_16
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 56043296 - 56043519
Alignment:
| Q |
12 |
cactttcttcactttcagaactcaaccactaactatctctgctattctcatgcaaatcgctgttattcccatcggaaagttcatggccgccactcttccc |
111 |
Q |
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| T |
56043296 |
cactttcttcactttcagaactcaaccactaactatctctgctattctcatgcaaatcgctgttcttcccatcggaaagttcatggccgccactcttccc |
56043395 |
T |
|
| Q |
112 |
accaaagagtataacttttttgggcggtggcgtttcacgttgaatcctggtccgtttaatatgaaggagcatgttattatcactatttttgctaactgtg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56043396 |
accaaagagtataacttttttgggcggtggcgtttcacgttgaatcctggtccgtttaatatgaaggagcatgttattatcactatttttgctaactgtg |
56043495 |
T |
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| Q |
212 |
gtgtttctcaaggtggtgatgatg |
235 |
Q |
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|||||||||||||||||| ||||| |
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| T |
56043496 |
gtgtttctcaaggtggtggtgatg |
56043519 |
T |
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