View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_18 (Length: 238)
Name: NF5836_low_18
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_18 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10272146 - 10271926
Alignment:
| Q |
18 |
gtttatgataattaatcttgtataatttgcaggcttatacaggtataagctaggagatgtagtaaaggttacagggttacgtaactcaactccagaaatc |
117 |
Q |
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| T |
10272146 |
gtttatgataattaatcttgtataatttgcaggcttatacaggtataagctaggagatgtagtaaaggttatagggttacgtaactcaactccagaaatc |
10272047 |
T |
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| Q |
118 |
aggtttattcgcaggaacaatcttatgcttacaatcaacattgacaagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttag |
217 |
Q |
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| T |
10272046 |
aggtttattcgcaggaacaatcttatgcttacaatcaacattgacaagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttag |
10271947 |
T |
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| Q |
218 |
ctgaggagaaaattgaagtga |
238 |
Q |
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| T |
10271946 |
ctgaggagaaaattgaagtga |
10271926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 10283625 - 10283414
Alignment:
| Q |
27 |
aattaatcttgtataatttgcaggcttatacaggtataagctaggagatgtagtaaaggttacagggttacgtaactcaactccagaaatcaggtttatt |
126 |
Q |
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| T |
10283625 |
aattgatcttggacaatttgtaggcttatataggtataggctcggagatgtggtgaaggttatgggattccataactcaactccagaaatcaggtttctt |
10283526 |
T |
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| Q |
127 |
cgcaggaacaatcttatgcttacaatcaacattgacaagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggaga |
226 |
Q |
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| T |
10283525 |
cgcaggaacaatcttatgcttacgatcaacattgacaagaactcagaagctgatctgcaactatcggtggaaacagcatccgagttgttagctaaggaga |
10283426 |
T |
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| Q |
227 |
aaattgaagtga |
238 |
Q |
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| T |
10283425 |
aaatagaagtga |
10283414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 10263952 - 10263754
Alignment:
| Q |
40 |
taatttgcaggcttatacaggtataagctaggagatgtagtaaaggttacagggttacgtaactcaactccagaaatcaggtttattcgcaggaacaatc |
139 |
Q |
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| T |
10263952 |
taatttgcaggcttatacaggtataggctaggagatgcagtaaaggtaatagggttccataagtcagctccagaaatcaagtttctttgcaggagcaacc |
10263853 |
T |
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| Q |
140 |
ttatgcttacaatcaacattgacaagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggagaaaattgaagtga |
238 |
Q |
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| T |
10263852 |
ttatgctcacaatcaacattgacaagaacacagagaatgatctacaaatatcggtcgaaacatcgtccaagatgttagctgaggagaaaatggaagtga |
10263754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 10241994 - 10241783
Alignment:
| Q |
27 |
aattaatcttgtataatttgcaggcttatacaggtataagctaggagatgtagtaaaggttacagggttacgtaactcaactccagaaatcaggtttatt |
126 |
Q |
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| T |
10241994 |
aattaatcttggataatgtgcaggcttatacagatataggttaggggatgtggtaaaggttatgggattccataactcaactccaaaaatcaagtttctt |
10241895 |
T |
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| Q |
127 |
cgcaggaacaatcttatgcttacaatcaacattgacaagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggaga |
226 |
Q |
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| T |
10241894 |
cgtaggagcaaccttatgcttactatcaacattgataagaacactgagaatgatttacaattatcagtggaaacagcttccatgttgttagctgaagaga |
10241795 |
T |
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| Q |
227 |
aaattgaagtga |
238 |
Q |
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| T |
10241794 |
aaatggaagtga |
10241783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 48369471 - 48369597
Alignment:
| Q |
47 |
caggcttatacaggtataagctaggagatgtagtaaaggttacagggttacgtaactcaactccagaaatcaggtttattcgcaggaacaatcttatgct |
146 |
Q |
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| T |
48369471 |
caggtttatacaggtataggctaggggatgtggtaaaagttatgggattccataactcaactccagaactaaagtttattcgtaggagtagtcttctgct |
48369570 |
T |
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| Q |
147 |
tacaatcaacattgacaagaacacaga |
173 |
Q |
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| T |
48369571 |
aaacataaacattgacaagaacacaga |
48369597 |
T |
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