View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_19 (Length: 238)
Name: NF5836_low_19
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26438527 - 26438290
Alignment:
| Q |
1 |
atactagtatatatttatcgttttcttgggtacaaggaaacattttcttttcactcaagggtacaataaaacatagatatttgaactaagtgcattacta |
100 |
Q |
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| T |
26438527 |
atactagtatatatttatcgttttcttgggtacaaggaaacattttcttttcactcaagggtacaataaaacatagatatttgaactaagtgcattacta |
26438428 |
T |
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| Q |
101 |
taagctagtcaatatatttaattaatttagtttataaaccacttcagtgtaatttaatcggttaattgagaaattaagggaaagtgttaccaccatcgac |
200 |
Q |
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| T |
26438427 |
taagctagtcaatatatttaattaatttagtttataaaccacttcagtgtaatttaatcggttaattgagaaattaagggaaagtgttaccaccatcgac |
26438328 |
T |
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| Q |
201 |
taaccgacttttctatttcatccacattgagtatcttt |
238 |
Q |
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|||||| || ||| ||||||||||||||||||||||| |
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| T |
26438327 |
aaaccgatttgtctgtttcatccacattgagtatcttt |
26438290 |
T |
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