View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_22 (Length: 209)
Name: NF5836_low_22
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 40191897 - 40192074
Alignment:
| Q |
17 |
actaaaatgaaaatctacacatgacccatttcaacatttaaggtaaagtaaaaaacttgcttaccaaaaaagtagttttcccaatatggcaatcacccaa |
116 |
Q |
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| T |
40191897 |
actaaaatgaaaatctacacatgacccatttcaacatttaaggtaaagtaaaaaacttgcttaccaaaaaagtagttttcccaatatgacaatcacccaa |
40191996 |
T |
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| Q |
117 |
caaactaatcttaaggttcaccaaatcagaatctgactcatacccattattggtatgctgttgttctcgtgtgaaacc |
194 |
Q |
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| T |
40191997 |
caaactaatcttaaggttcaccaaatcagaatctgactcatacccattattggtatgctgttgttctcgtgtgaaacc |
40192074 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 36886091 - 36886050
Alignment:
| Q |
68 |
aaaacttgcttaccaaaaaagtagttttcccaatatggcaat |
109 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||| |
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| T |
36886091 |
aaaacttgcttaccaaccaagtaattttcccaatatggcaat |
36886050 |
T |
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