View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_4 (Length: 584)
Name: NF5836_low_4
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Complemental strand, 46737260 - 46736718
Alignment:
| Q |
13 |
agcaaaggtggtagctgaaaatattcttgatcctaatacagtgttgacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgt |
112 |
Q |
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| T |
46737260 |
agcaaaggtggtagctgaaaatattcttgatcctaatacagtgtagacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgt |
46737161 |
T |
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| Q |
113 |
gaagttagagtgtgtcatgtgtaccgtgaaactaatggtagtgcagatgccttcattaatatggaatgtgatcatgatccatacatggttttctatgagc |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46737160 |
gaagttagagtgtgtcatgtgtaccgtgaagctaatggttgtgcagatgccttcattaatatggaatgcgatcatgatccatacatggttttctatgagc |
46737061 |
T |
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| Q |
213 |
aacaacatcccctgttgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaa |
312 |
Q |
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| T |
46737060 |
aacaacatcccctgttgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaa |
46736961 |
T |
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| Q |
313 |
caagagatatcaatgctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaataccagcaagcaacacaatactagt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736960 |
caagagatatcaatgctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaataccagcaagcaacacaatactagt |
46736861 |
T |
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| Q |
413 |
tcaatatctttttcaatatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctc |
512 |
Q |
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||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736860 |
tcaat------------atctaatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctc |
46736773 |
T |
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| Q |
513 |
cgatatttccatagacaacaactccgatatttccataaacgacaatgacttactt |
567 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46736772 |
cgatatttccatagacaacaactccgatatttccatagacgacaatgacttactt |
46736718 |
T |
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