View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5836_low_5 (Length: 575)
Name: NF5836_low_5
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_5 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 38248217 - 38247664
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtctaatcaatcatgattctgccccttaagagggattctatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38248217 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtataatcaatcatgattctgccccttaagagggattctatat |
38248118 |
T |
|
| Q |
101 |
ttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatcatatataatcacctctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38248117 |
ttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatcatatataatcacctctat |
38248018 |
T |
|
| Q |
201 |
ttgttcatgtaatagttttcaatcgagggtagcaaatgtttaacaaagaagagaatagtatcatatatttgcaatttagtactatcagtgtttcttatac |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38248017 |
ttgttcatgtaatagttttcaatcaagggtagaaaatgtttaacaaagaagagaatagcatcatatatttgcaatttagtactatcagtgtttcttatac |
38247918 |
T |
|
| Q |
301 |
ttttgatcaagaagtaaccactgtattttttacatttactagttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctatac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38247917 |
ttttgatcaagaagtaaccactgtattttttacatttactagttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctatac |
38247818 |
T |
|
| Q |
401 |
caagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38247817 |
caagttatggaaccggaaatgaagcaggaaatgaggcaacct--atattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgat |
38247720 |
T |
|
| Q |
501 |
ggtgaaactttaaccctagagtctaactacaacagcaccagggagcacactggagt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38247719 |
ggtgaaactttaaccctagagtctaactacaacagcaccagggagcacactggagt |
38247664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 51 - 556
Target Start/End: Complemental strand, 38253199 - 38252695
Alignment:
| Q |
51 |
tggaagggtctaatcaatcatgattctgccccttaagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgta-gtg |
149 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||| | ||| |
|
|
| T |
38253199 |
tggaagggtctaatcaataatgattctgcctcttaagagggattccatatttacactcaatatagcaccgacacttgagattaaagatgtgtaacacgtg |
38253100 |
T |
|
| Q |
150 |
tcggacaccgagacaatattgacattttttatcatatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaacaaaga |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||| ||||| |
|
|
| T |
38253099 |
tcggacaccgagacaatattggcattttttatcatatataatcacctctatttgatcatgtaatagttttcgatagagggtaacaaatgtttaataaaga |
38253000 |
T |
|
| Q |
250 |
agagaatagtatcatatatttgcaatttagtactatcagtgtttcttatacttttgatcaagaag-taaccactgtattttttacatttactagttttgt |
348 |
Q |
| |
|
||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||| | ||||| ||| || |||| ||| || ||| || ||||||| |
|
|
| T |
38252999 |
agagaatggtgtcatatatttgcaatttagtaccatcgatgtttcttatacatttgacccagaagttaaacattgta-tttgtatattagcttgttttgt |
38252901 |
T |
|
| Q |
349 |
gatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatat |
448 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||| || | || || |
|
|
| T |
38252900 |
gaaatttgtggattatgttttcaggatgggagggttatatgttcttctataccaaattacggaaagggaagtgaagcaggaaatgaatcaggc--tacat |
38252803 |
T |
|
| Q |
449 |
tgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagcaccagggagcac |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
38252802 |
tgtaggaatgtccacatgttatcctaaaccaggttctgttaagataattgatggtgaaactttgactctagagtctaactacaacagcaccaaggagcac |
38252703 |
T |
|
| Q |
549 |
actggagt |
556 |
Q |
| |
|
|| ||||| |
|
|
| T |
38252702 |
accggagt |
38252695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 342 - 556
Target Start/End: Complemental strand, 38213510 - 38213298
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
38213510 |
gttttctgaaatatgtggattatgttttcaggatggaagggttatatgttcttctataccaagttatggaactggaaatgaagcaggaaatgaggcaaac |
38213411 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagcaccag |
541 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| || || || |
|
|
| T |
38213410 |
tatat--tgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttgactctagtgtctaactacagcaacagcaa |
38213313 |
T |
|
| Q |
542 |
ggagcacactggagt |
556 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38213312 |
ggagcacactggagt |
38213298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 342 - 556
Target Start/End: Complemental strand, 38237414 - 38237202
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||| || |
|
|
| T |
38237414 |
gttttgtgaaatttgtggattatgttttcaggatggaagggttatatgttcctctataccaagttatggaaatggaagcgaagcaggaaatgaagcggg- |
38237316 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagcaccag |
541 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38237315 |
-atacattgtaggaatgtccacttgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaactctagagtctaactacaacagcaccaa |
38237217 |
T |
|
| Q |
542 |
ggagcacactggagt |
556 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
38237216 |
ggagcacaccggagt |
38237202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 342 - 556
Target Start/End: Complemental strand, 38225995 - 38225783
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
|||||| || || ||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |||| ||||||||||| || |||||| || | |
|
|
| T |
38225995 |
gttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctctataccaagttacggaaatggaaatgaagctgggaatgagacaggc |
38225896 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagcaccag |
541 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
38225895 |
--tacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagatagttgatggtgaaactttaactctagtgtctaactacagcagcaccaa |
38225798 |
T |
|
| Q |
542 |
ggagcacactggagt |
556 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38225797 |
ggagcacactggagt |
38225783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 342 - 534
Target Start/End: Complemental strand, 38242614 - 38242424
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| | |
|
|
| T |
38242614 |
gttttgtgaaattgatggattatgttttcaggatgggagggttatatgttcttccaaaccaagttatggaaatggaagcgaagcaggaaatgaagtggg- |
38242516 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaaca |
534 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38242515 |
-atacattgtaggaatgtccacatgttatcctaaaccaggttcaatcaagattattgatggtgaaactttaactctagagtctaactacaaca |
38242424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 352 - 514
Target Start/End: Complemental strand, 38219898 - 38219738
Alignment:
| Q |
352 |
atttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgt |
451 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| ||||| ||||| ||||||||| || | || ||||| |
|
|
| T |
38219898 |
atttatggattatgttttcaggatgagagggttatatgctcttcaataccaagatatggaaatggaaacgaagctggaaatgagacaggc--tacattgt |
38219801 |
T |
|
| Q |
452 |
aggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaac |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38219800 |
aggaatgtccacatgttatcctaaaccaggttctatcaagattattgatggtgaaactttaac |
38219738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38253370 - 38253323
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaa |
48 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38253370 |
gagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaa |
38253323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 38242785 - 38242725
Alignment:
| Q |
183 |
atatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaa |
243 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
38242785 |
atatataatcccttctatttgttcatgtaatagttttcgattgaggttagcaaatgtttaa |
38242725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38243017 - 38242976
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
42 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38243017 |
gaggaaaatgggtgtgttcatgtgaagaggacaagtctccca |
38242976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38214120 - 38214072
Alignment:
| Q |
5 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38214120 |
gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactgg |
38214072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38226499 - 38226451
Alignment:
| Q |
5 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38226499 |
gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg |
38226451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 38226122 - 38226069
Alignment:
| Q |
185 |
atataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatg |
238 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||| |||| || |||||| |
|
|
| T |
38226122 |
atataatcacttctatttgatcatgtgatagttttcaattgaggctaacaaatg |
38226069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 342 - 556
Target Start/End: Complemental strand, 17453822 - 17453610
Alignment:
| Q |
342 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
441 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17453822 |
gttttgtgaaatttgtggattatgttttcaggatgggagagttatatgttcttctgtaccaagttatggacatggaaatgaagcaggaaatgaggca--g |
17453725 |
T |
|
| Q |
442 |
tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagcaccag |
541 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |||||| | || ||||||||||||| ||||| |
|
|
| T |
17453724 |
ggtacattgtaggaatgtctacttgttatcctaaaccaggttctgtcaagataattgatggtgaaattttaactcatgaatctaactacaacaacaccaa |
17453625 |
T |
|
| Q |
542 |
ggagcacactggagt |
556 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
17453624 |
agagcatactggagt |
17453610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 352 - 556
Target Start/End: Complemental strand, 17432914 - 17432724
Alignment:
| Q |
352 |
atttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||| || ||||| |
|
|
| T |
17432914 |
atttgtggattatgttttcaggatgggagggttatatgttcttctacaccaagttatggcaatggaaatgaggcaggg--------------tacattgt |
17432829 |
T |
|
| Q |
452 |
aggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagcaccagggagcacact |
551 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||| |||||||||| || ||||| || |||||| |
|
|
| T |
17432828 |
aggaatgtctacttgttatcctaaaccaggttctgtcaagataaatgatggtgaaattttaactctagaatctaactacaccaacaccaaagaccacact |
17432729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17433520 - 17433468
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
17433520 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg |
17433468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17454599 - 17454547
Alignment:
| Q |
1 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
53 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
17454599 |
gagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactgg |
17454547 |
T |
|
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Target: scaffold0083 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 521
Target Start/End: Original strand, 48989 - 49137
Alignment:
| Q |
371 |
aggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgttat |
470 |
Q |
| |
|
||||||||| ||| |||||| ||| | ||||| ||||||| ||||| |||||||||||||| || |||| |||||||||||||||| |||||| |
|
|
| T |
48989 |
aggatgggaaggtaatatgtaattcaaaaccaaaatatggaaatggaaaggaagcaggaaatgaa--aaaggatatgttgtaggaatgtccacttgttat |
49086 |
T |
|
| Q |
471 |
cctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagag |
521 |
Q |
| |
|
||| ||||||||||| ||||||| || |||||||||||||||| |||||| |
|
|
| T |
49087 |
cctcaaccaggttctatcaagatatttaatggtgaaactttaactctagag |
49137 |
T |
|
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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 444 - 531
Target Start/End: Original strand, 11475240 - 11475327
Alignment:
| Q |
444 |
tatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactaca |
531 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||||| |||||||| |
|
|
| T |
11475240 |
tatattgtaggaatgtcaacatgttaccctaaaccaggttctatcaagatatttgatggtgagactttaacattagagagtaactaca |
11475327 |
T |
|
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 369 - 531
Target Start/End: Original strand, 11486400 - 11486560
Alignment:
| Q |
369 |
tcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgtt |
468 |
Q |
| |
|
||||||||| || ||||||||| |||| || |||| ||||||| ||||| ||||||||||||| || |||| ||||||| ||||| ||||||| |
|
|
| T |
11486400 |
tcaggatggaagagttatatgtacttcaatcccaaaatatggaaaaggaaagagagcaggaaatgag--aaaggatatgttgtaggcatgtcaacatgtt |
11486497 |
T |
|
| Q |
469 |
atcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactaca |
531 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
11486498 |
accctaaaccaggttctatcaagatatttgatggtgaaaatttaacattagagactaactaca |
11486560 |
T |
|
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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 537
Target Start/End: Original strand, 11480655 - 11480744
Alignment:
| Q |
448 |
ttgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctagagtctaactacaacagca |
537 |
Q |
| |
|
||||||||||||| || ||||| |||| |||||||||| ||||||| |||||||||||| |||||| ||||| ||||| ||| ||||| |
|
|
| T |
11480655 |
ttgtaggaatgtcaacttgttaccctataccaggttctatcaagatatttgatggtgaaattttaactttagaggctaaccacagcagca |
11480744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 519
Target Start/End: Original strand, 11463351 - 11463422
Alignment:
| Q |
448 |
ttgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaaccctag |
519 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||||| ||||| | |||||||||||| |||||| |||| |
|
|
| T |
11463351 |
ttgtaggaatgtcaacttgttaccctaaaccaggttctatcaagttatttgatggtgaaattttaacactag |
11463422 |
T |
|
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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 21547882 - 21547947
Alignment:
| Q |
448 |
ttgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatggtgaaactttaa |
513 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
21547882 |
ttgtaggaatgaccacttgttatcctcaaccaggttctatcaagatacttaatggtgaaactttaa |
21547947 |
T |
|
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