View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_7 (Length: 484)
Name: NF5836_low_7
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 3031674 - 3031218
Alignment:
| Q |
19 |
atgcctaatagagcacatctcgagaagtgaagcgcatggattccattacaagatcgccagtttatgcacattttggagaatcaatgaatggtgtgtcaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3031674 |
atgcctaatagagcacatctcgagaagtgaagcgcatggattccattacaagatcgccagtttatgcacattttggagaatcaatgaatggtgtgtcaag |
3031575 |
T |
|
| Q |
119 |
cattcgtgcttacaaggcatacgacaggatattacacgacaacggaaaattcatggataacaatatcagatttactcttgcaaatattagtacaaaccgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3031574 |
cattcgtgcttacaaggcatacgacaggatattacacgacaatggaaaattcatggataacaatatcagatttactcttgcaaatattagtacaaaccgt |
3031475 |
T |
|
| Q |
219 |
tggttaaccataaggttagaaagtttaggtggcctcatgatttggttgatagcaacatttgctgtgttacaaaatgcacgatctgaaaaccctacattgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3031474 |
tggttaaccataaggttagaaagtttaggtggcctcatgatttggttgatagcaacatttgctgtgttacaaaatgcacgatctgaaaaccctacattgg |
3031375 |
T |
|
| Q |
319 |
ttgcatctacaatgggtctacttctcagctacacattgaacataacaagtattatgagtagcacacttagacaagcaagtaaagctgaaaacagtttaaa |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3031374 |
ttgcatctacaatgggactacttctcagctacacattgaacataacaagtattatgagtagcacacttagacaagcaagtaaagctgaaaacagtttaaa |
3031275 |
T |
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| Q |
419 |
ttcggtcgagcgcgttggaacatatatagatttagaagccgagggtcaaagtataat |
475 |
Q |
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| T |
3031274 |
ttcggttgagcgcgttggaacatatatagatttagaagccgagggtcaaagtataat |
3031218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 3007592 - 3007136
Alignment:
| Q |
19 |
atgcctaatagagcacatctcgagaagtgaagcgcatggattccattacaagatcgccagtttatgcacattttggagaatcaatgaatggtgtgtcaag |
118 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
3007592 |
atgcctaatagagcacggctcgagaggtgaagcgcatggattccattacaagatctcctgtttatgcacattttggagaatcattgaacggtttgtcaag |
3007493 |
T |
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| Q |
119 |
cattcgtgcttacaaggcatacgacaggatattacacgacaacggaaaattcatggataacaatatcagatttactcttgcaaatattagtacaaaccgt |
218 |
Q |
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||||||||||||||| | ||||||||||| | | || ||| || |||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
3007492 |
cattcgtgcttacaaagtgtacgacaggatgtcaaacatcaatgggaaattcatggataacaatataagatttactcttgtgaatattagttcaaaccgt |
3007393 |
T |
|
| Q |
219 |
tggttaaccataaggttagaaagtttaggtggcctcatgatttggttgatagcaacatttgctgtgttacaaaatgcacgatctgaaaaccctacattgg |
318 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||| || |
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| T |
3007392 |
tggctaaccataaggttagaaagtttaggaggcctcatgatttggttgatagcgacatttgctgtcttacaaaatgcaagatctgaaaatcctacactga |
3007293 |
T |
|
| Q |
319 |
ttgcatctacaatgggtctacttctcagctacacattgaacataacaagtattatgagtagcacacttagacaagcaagtaaagctgaaaacagtttaaa |
418 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||| | || | ||| | ||||||||||||||||| ||||||||||||||| || |
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| T |
3007292 |
ttgcatctacaatgggtctacttctcagttatacattgaacataacaaatcttttaagtggtgtacttagacaagcaagtagagctgaaaacagtttgaa |
3007193 |
T |
|
| Q |
419 |
ttcggtcgagcgcgttggaacatatatagatttagaagccgagggtcaaagtataat |
475 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||| |
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|
| T |
3007192 |
ttcggtcgagcgcgttgacacatatataaatttagaaacggagggtcaaagtataat |
3007136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 6102643 - 6102527
Alignment:
| Q |
27 |
tagagcacatctcgagaagtgaagcgcatggattccattacaagatcgccagtttatgcacattttggagaatcaatgaatggtgtgtcaagcattcgtg |
126 |
Q |
| |
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|||||||| |||| ||||| ||||| ||||||| |||| ||||| || ||||||||||| ||||| ||| || | |||||| | |||| ||||||| |
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| T |
6102643 |
tagagcactgctcgtgaagtaaagcgattggattcaattagcagatctcctgtttatgcacaatttggggaagcactaaatggtctatcaacgattcgtg |
6102544 |
T |
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| Q |
127 |
cttacaaggcatacgac |
143 |
Q |
| |
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||||||| || |||||| |
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| T |
6102543 |
cttacaaagcctacgac |
6102527 |
T |
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Back To:
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