View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_8 (Length: 483)
Name: NF5836_low_8
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Complemental strand, 31304743 - 31304284
Alignment:
| Q |
10 |
acatcatccgcaatcaacgtagccaatgctgctcccaaactatgaccagttatggtcaaactcaattcttcttgactgtatatttgattgatccttaaaa |
109 |
Q |
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| T |
31304743 |
acatcatacgcaatcaacgtagccaatgctgctcccaaactatgtccagttatggtcaaactcaattcttcttgacggtatatttgattgatccttaaaa |
31304644 |
T |
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| Q |
110 |
tctcttgtttcaccattttttgcatactttctaacgatgattttgcatgatttgatgaggtatagagattcaagaatccactttctaccatggtccccac |
209 |
Q |
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| T |
31304643 |
tctcttgtttcaccattttttgcatactttctaacgatgattttgcataatttgatgaggtatagagattcaagaatccactttctaccatggtccccac |
31304544 |
T |
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| Q |
210 |
accttttctctcatcattaatgttgtggttgcatgggatagaaaagttggtgagtgtggcacgaaagttttcaagccattctaaacatgtgcatgttcct |
309 |
Q |
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| T |
31304543 |
accttttctctcatcattaatgttgtggttgcatgggatagaaaagttggtgagtgtggcacgaaagttttcaagccattctaaacatgtgcatgttcct |
31304444 |
T |
|
| Q |
310 |
ctaatagcaataaccacatcacgccgtccaagtcttttgatttcttccttgttatcacacacagctacgtatccaatatagcttgattgggttgctaccc |
409 |
Q |
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| T |
31304443 |
ctaatagcaataaccacatcacgccgtccaagtcttttgatttcttccttgttatcacacacagctacgtatccaatatagcttgattgggttgctaccc |
31304344 |
T |
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| Q |
410 |
aatctggtgccttatccatccaacttggtagctgaatcccagaagttgcatgtaggtatt |
469 |
Q |
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| T |
31304343 |
aatttggtgccttatccatccaacttggtagctgaatcccagaagttgcatgtaggtatt |
31304284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 463
Target Start/End: Complemental strand, 31262426 - 31262218
Alignment:
| Q |
255 |
gttggtgagtgtggcacgaaagttttcaagccattctaaacatgtgcatgttcctctaatagcaataaccacatcacgccgtccaagtcttttgatttct |
354 |
Q |
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|||||| || |||||||||| ||||| |||||||||||||| || ||||||||| | |||||||| || || | || ||||| | ||| |||||| |
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| T |
31262426 |
gttggttagagtggcacgaagattttcgagccattctaaacaagtagttgttcctcttaatgcaataacaacgtctcttcgaccaagccgtttaatttct |
31262327 |
T |
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| Q |
355 |
tccttgttatcacacacagctacgtatccaatatagcttgattgggttgctacccaatctggtgccttatccatccaacttggtagctgaatcccagaag |
454 |
Q |
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| T |
31262326 |
tctttgttgtcacaaacagctacataaccaatgtagcttgattttgttgcaacccatgatggtgctttgtctatccaactaggtagttgaattcctgagg |
31262227 |
T |
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| Q |
455 |
ttgcatgta |
463 |
Q |
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| T |
31262226 |
tagcatgta |
31262218 |
T |
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