View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5836_low_9 (Length: 428)
Name: NF5836_low_9
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5836_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 45451256 - 45450857
Alignment:
| Q |
18 |
acaacaagccaaacaagaccataaccaacaacattctgaaggacaccaactagtataactgcccaaacaggccaagctttgcttataaacccagcaagaa |
117 |
Q |
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| T |
45451256 |
acaacaagccaaacaagaccataaccaacaacattctgaaggacaccaactagtataactgcccaaacaggccaagctttgcttataaacccagcaagaa |
45451157 |
T |
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| Q |
118 |
gtccaacgttgtcacccaaatccttagccacacttaagaaagctacttgcttctgattgtaacccatgctgctctttatgactggtgatatgcttccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45451156 |
gtccaacgttgtcacccaaatccttagccacacttaagaaagctacttgcttctgattgtaacccatgctgctctttatgactggtgatatgcttccaaa |
45451057 |
T |
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| Q |
218 |
catgtaagctgttcctgcaaatgacatatcccacattgcacacacaaacaccacccatctgtgtcccacaaatttcttcaacttttcttgcaatgagacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45451056 |
catgtaagctgttcctgcaaatgacatatcccacattgcacacacaaacaccacccatctgtgtcccacaaatttcttcaacttttcttgcaatgagacc |
45450957 |
T |
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| Q |
318 |
atgtcgcttatatttgaacacttaatttgcttatcaataagctaccttaaggttgcttatcaaatcaacttctcatcccacttcactctgatgatgatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45450956 |
atgtcgcttatatttgaacacttaatttgcttatcaataagctaccttaaggttgcttatcaaatcaacttctcatcccacttcactctgatgatgatgt |
45450857 |
T |
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