View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5837-Insertion-2 (Length: 885)
Name: NF5837-Insertion-2
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5837-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 14 - 872
Target Start/End: Complemental strand, 2341355 - 2340495
Alignment:
| Q |
14 |
aagcattaaaaagcaaggattggtgtgaaggtggaacaaaatgcctaatgaaagaaactgagggttcttggagcaatggaagtgataatagcttaaacat |
113 |
Q |
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| T |
2341355 |
aagcattaaaaagcaaggattggtgcgaaggtggaacaaaatacctaatgaaagaaactgagggttcttggagcaatggaagtgataatagcttaaacat |
2341256 |
T |
|
| Q |
114 |
taatttagatctttcaagaacacaagctttgaacagttctatttcttcacagaatggtagaaacctaattagccttctaccaacttcattaaatccaaac |
213 |
Q |
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| T |
2341255 |
taatttagatctctcaagaacacaagctttgaacagttctgtttcttcacagaatggtagaaacctaattagccttctaccaacttcattaaatccaaac |
2341156 |
T |
|
| Q |
214 |
aacataccccaacttcttcaattcacatcaagaccagatattcaagatgaaaacttcagcagtatgtttcacaacattgatgagcatcagaacctctggc |
313 |
Q |
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| T |
2341155 |
aacataccccaacttcttcaattcacatcaagaccagatattcaagatgaaaacttcagcagcatgtttcacaacattgatgagcatcagaacctctggc |
2341056 |
T |
|
| Q |
314 |
cttggacatagatgcatcattttcattggccttaatactaatgattttcgatatcattgatcaattggttcaaaattgcgataagagttacgctgcaaac |
413 |
Q |
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| T |
2341055 |
cttgggcatagatgcatcattttcattggccttattatta---attttggatatcattgatcaaatggttcaaaattgcgattagagttatgctgcaaac |
2340959 |
T |
|
| Q |
414 |
cttaatattg-tgcaaaatacagaagaatgtgactaatgtggagacaattgcagttacaaacttacaatggcattgtagagacctctaaaatatttatat |
512 |
Q |
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|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2340958 |
cttattattgcggaaaaatacagaagaatgtgactaatgtggagacaattgcagttacaaacttacaatggcattatagagacctctaaaatatttatat |
2340859 |
T |
|
| Q |
513 |
attgatcacaattatagttgcagatatttgaagttatgttgnnnnnnnaagggtcaaaatgagaagcaagaaaattaggaataatacaataaaacttcat |
612 |
Q |
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| T |
2340858 |
attgatcacaattatagttgcagatatttgaagttatgttgtttttttaagggtcaaaatgagaagcaagaaaattacgaataatacaataaaacttcat |
2340759 |
T |
|
| Q |
613 |
tttttactacgacaaaattcatttattattagaaatgctaagggttcaccctcgaaaaattcatttatcaattttaaatagagagaatcctaactcacat |
712 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
2340758 |
tttttattacgacaaaattcatttattattagaaatgctaagggttcaccctcgaaaaattcatttatcaatttgaaatagagagaatcctaactcatat |
2340659 |
T |
|
| Q |
713 |
taa--acacactataataataactttatttttctattaattagtttttggatttgtttatgttgtaggtaaagttggaacagatctacgtaagatctaga |
810 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2340658 |
taaacacacactataataataactttatttttctattaattagtttttggatttgtttatgttgtaggtaaagttgaaacagatctacgtaagatctaga |
2340559 |
T |
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| Q |
811 |
attaaatcataattgggtcgcacagagtagtgctagc-ttttctttt-catactttattgtgat |
872 |
Q |
| |
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| T |
2340558 |
attaaatcataattgggtcacatagagtagtgctagctttttcttttccatactttattgtgat |
2340495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 3352029 - 3351957
Alignment:
| Q |
64 |
aaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctttcaagaacac |
136 |
Q |
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||||||| ||| |||||||||||||||||||||||||| |||| | | || ||| |||| ||||| ||||||| |
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| T |
3352029 |
aaagaaaatgaaggttcttggagcaatggaagtgataacagctcagatatgaatctagacctttctagaacac |
3351957 |
T |
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