View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5837-Insertion-4 (Length: 760)

Name: NF5837-Insertion-4
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5837-Insertion-4
NF5837-Insertion-4
[»] chr1 (14 HSPs)
chr1 (484-760)||(2947002-2947278)
chr1 (209-401)||(2946735-2946927)
chr1 (483-760)||(3353410-3353690)
chr1 (48-195)||(3354135-3354282)
chr1 (219-383)||(3353801-3353969)
chr1 (562-757)||(3380268-3380463)
chr1 (674-748)||(3364051-3364125)
chr1 (692-757)||(2007919-2007984)
chr1 (692-746)||(3217179-3217233)
chr1 (603-757)||(3342708-3342862)
chr1 (705-746)||(1794136-1794177)
chr1 (676-745)||(4333563-4333632)
chr1 (683-757)||(3374142-3374216)
chr1 (692-757)||(2021056-2021121)
[»] chr2 (4 HSPs)
chr2 (599-757)||(20924555-20924713)
chr2 (676-756)||(39275308-39275388)
chr2 (676-755)||(20936167-20936246)
chr2 (692-742)||(20954421-20954471)
[»] chr4 (1 HSPs)
chr4 (677-747)||(21238955-21239025)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 484 - 760
Target Start/End: Original strand, 2947002 - 2947278
Alignment:
Q  484 cacaatgtcaatcggtcataatttgctacattattgaaaagtttagtcataaccacctaaaaagacaatgatacttttaggagaatagaaaacattgaga 583  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2947002 cacaatgtcaatcggtcataatttgccacattattgaaaagtttagtcataaccacctaaaaagacaatgatacttttaggagaatagaaaacattggga 2947101  T
Q  584 agagtcttttccacagtaaataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcaggctcc 683  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2947102 agagtcttttccacagtaaataacttcagcttgtctcgacattttcttgagctgtaatagttctgtcatcacctcagatctgatctctacatcaggctcc 2947201  T
Q  684 acaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaat 760  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2947202 acaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaat 2947278  T

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Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 209 - 401
Target Start/End: Original strand, 2946735 - 2946927
Alignment:
Q  209 tacattcttattttaaattatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgctt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2946735 tacattcttattttaaaatatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgctt 2946834  T
Q  309 ccaaaaccaccaacttttgatttaggaaattagtgcatttttcaataggatcaaaaacccaaataggaaaatatattttaattaatgaggggg 401  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2946835 ccaaaaccaccaacatttgatttaggaaattagggcatttttcaataggatcaaaaacccaaataggaaaatatattttaattaatgaggggg 2946927  T

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Target: chr1; HSP #3
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 483 - 760
Target Start/End: Complemental strand, 3353690 - 3353410
Alignment:
Q  483 tcacaatgtcaatcggtcataatttgctacattattgaaaagtttagtcataaccacctaaaaagaca--atgatacttttaggagaatagaaaacattg 580  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||| ||||| ||  |||| ||||||||||||||||||||||||     
T  3353690 tcacaatgtcaatcggtcataatttgccacatcattgaaaagtttactcataacaaccttaaaagccataatgaaacttttaggagaatagaaaacatta 3353591  T
Q  581 agaagagtcttttccacagtaaataacttcagcttgtctc-gacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcagg 679  Q
     |||||||||||||||| ||||||||||||||| |||||| |||||| |||| | |||   || |||||||||||||||||||||||||| ||||| |||    
T  3353590 ggaagagtcttttccacggtaaataacttcagcctgtctctgacactctcttcaactggtttacttctgtcatcacctcaggtctgatctttacataagg 3353491  T
Q  680 ctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaat 760  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3353490 ctccaaaatcacatattctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaat 3353410  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 48 - 195
Target Start/End: Complemental strand, 3354282 - 3354135
Alignment:
Q  48 tactgtaaatctgttaaatatactggaaa-tgaatttggtactctggacaaataactaattgaagaaacatgagatatcaaataaaattgaacagtcgca 146  Q
    ||||||||||||||||||| ||||||||| ||| ||||| | ||| ||||||||||||||||||||||||||| | ||||||||||| |||| |||| ||    
T  3354282 tactgtaaatctgttaaatgtactggaaaatgagtttggga-tctagacaaataactaattgaagaaacatgaaacatcaaataaaaatgaagagtcaca 3354184  T
Q  147 aaggagcaataaaactggaaaagcacagtgaaaaaacttgtatggataa 195  Q
    ||| || ||||| | |||| |||||||||||||||||||||||||||||    
T  3354183 aagcagtaataacattggacaagcacagtgaaaaaacttgtatggataa 3354135  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 219 - 383
Target Start/End: Complemental strand, 3353969 - 3353801
Alignment:
Q  219 ttttaaattatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgcttccaaaaccac 318  Q
    ||||||||||| ||| |||||||||||||||||  ||| ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||     
T  3353969 ttttaaattatcgatgtgcataaagctttcttaggtaa-tactccttttt-ctatgcattaagctcaatcacaatgcttgttaaatgcttccaaaaccag 3353872  T
Q  319 caacttttgatttaggaa-----atta--gtgcatttttcaataggatcaaaaacccaaataggaaaatata 383  Q
    |||| ||||||| |||||     | ||  ||| || |||||||||||| |||||||||||||||||||||||    
T  3353871 caacatttgattcaggaaaaagcactaaggtgtatctttcaataggat-aaaaacccaaataggaaaatata 3353801  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 562 - 757
Target Start/End: Complemental strand, 3380463 - 3380268
Alignment:
Q  562 aggagaatagaaaacattgagaagagtcttttccacagtaaataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcagg 661  Q
    ||||||||| |||||||   ||||||||||||  |  ||||||||||||||||| || |||| || ||||||   | | |||||||||||||| ||  ||    
T  3380463 aggagaataaaaaacatcatgaagagtcttttttaaggtaaataacttcagcttctcccgacgctctcttgaagcgaattagttctgtcatcaactttgg 3380364  T
Q  662 tctgatctctacatcaggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 757  Q
       ||  |||||| || ||| |||||||| |||||||||||| |||||||  ||||| ||||| |  |||||||||||||| ||||||||||||||    
T  3380363 ctggacgtctacaacatgcttcacaatcatcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccaga 3380268  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 674 - 748
Target Start/End: Complemental strand, 3364125 - 3364051
Alignment:
Q  674 atcaggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagattt 748  Q
    ||||||||||||||||| ||||||||| |  ||||||| || ||| |||||||||||||||||||||||||||||    
T  3364125 atcaggctccacaatcatcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagattt 3364051  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 692 - 757
Target Start/End: Complemental strand, 2007984 - 2007919
Alignment:
Q  692 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 757  Q
    |||||||||||  || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  2007984 cttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccaga 2007919  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 746
Target Start/End: Original strand, 3217179 - 3217233
Alignment:
Q  692 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagat 746  Q
    |||||||||||| |||||||  | ||| |||||||||||||||||||||||||||    
T  3217179 cttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagat 3217233  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 757
Target Start/End: Complemental strand, 3342862 - 3342708
Alignment:
Q  603 ataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcaggctccacaatcaccttttctagca 702  Q
    ||||||||||||||||| ||  || |||||| | | | ||||| |||||| ||||||| |||||  | | ||  ||||| ||| | || |||||||||      
T  3342862 ataacttcagcttgtcttgatgctctcttgaaccgaattagttttgtcattacctcagttctgacgtttgcaataggcttcacgaacatcttttctagat 3342763  T
Q  703 ttggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 757  Q
      ||||||| |||||| ||||||  |||||||||||||||||||||| |||||||    
T  3342762 caggagaatatagaagtagaaattggataaaatctaattcagatttggtaccaga 3342708  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 746
Target Start/End: Complemental strand, 1794177 - 1794136
Alignment:
Q  705 ggagaatgtagaagaagaaatctgataaaatctaattcagat 746  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  1794177 ggagaatatagaagtagaaatctgataaaatctaattcagat 1794136  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 745
Target Start/End: Original strand, 4333563 - 4333632
Alignment:
Q  676 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcaga 745  Q
    |||||| |||||||| |||||||||||   |||||| |||||| ||||||||||| |||| |||||||||    
T  4333563 caggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcaga 4333632  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 757
Target Start/End: Complemental strand, 3374216 - 3374142
Alignment:
Q  683 cacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 757  Q
    |||||||| |||||||||||  ||||||| | |||| ||||| |  |||||||||||||| ||| ||||||||||    
T  3374216 cacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccaga 3374142  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 757
Target Start/End: Complemental strand, 2021121 - 2021056
Alignment:
Q  692 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 757  Q
    |||||||||||| || ||||  ||||| |||||||| | |||||||||||||| ||| ||||||||    
T  2021121 cttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctttcataccaga 2021056  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 599 - 757
Target Start/End: Complemental strand, 20924713 - 20924555
Alignment:
Q  599 gtaaataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcaggctccacaatcaccttttct 698  Q
    |||||||||||||||||||   ||| || || ||| | | | ||||||||| |||| ||| ||| |||  | | || ||||||||||||||| |||||      
T  20924713 gtaaataacttcagcttgttcggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttg 20924614  T
Q  699 agcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 757  Q
    ||||  || ||||  ||||| |||||||||||||||||||||||||||||| |||||||    
T  20924613 agcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccaga 20924555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 676 - 756
Target Start/End: Complemental strand, 39275388 - 39275308
Alignment:
Q  676 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccag 756  Q
    |||||| ||||||||  ||||||||||| |||||||  |  ||||||||| ||||||||||||||||||||||||| ||||    
T  39275388 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccag 39275308  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 676 - 755
Target Start/End: Complemental strand, 20936246 - 20936167
Alignment:
Q  676 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgatacca 755  Q
    |||||| |||| ||| |||||||||||  ||||||| |||||| |||||| ||||||||||||||||  ||||| |||||    
T  20936246 caggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttacca 20936167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 742
Target Start/End: Complemental strand, 20954471 - 20954421
Alignment:
Q  692 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattc 742  Q
    |||||||||||| ||||||| |||||| |||||| ||||||||||||||||    
T  20954471 cttttctagcatgggagaatatagaagtagaaatttgataaaatctaattc 20954421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 747
Target Start/End: Complemental strand, 21239025 - 21238955
Alignment:
Q  677 aggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatt 747  Q
    ||||| |||| ||| |||||||| ||| |||||||  ||||| |||||||||||||||||||| |||||||    
T  21239025 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 21238955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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