View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5837-Insertion-5 (Length: 476)
Name: NF5837-Insertion-5
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5837-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 5535986 - 5536418
Alignment:
| Q |
8 |
aaattacataactcaagaatggtttatgataaatctctcttggttgctactctaaaatgcatgcataaactctcatctgtttgcaaccttagagcaaaag |
107 |
Q |
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| T |
5535986 |
aaattacataactcaagaatggttgatgataaatctctcttggttgctactctaaaatgcatgcataaactctcctctgtttgcaaccttagagcaaacg |
5536085 |
T |
|
| Q |
108 |
aagttgaggatgttaaatctgatttattatttcatagttcaccttttatattaatgttaatggtgaacaatttttaacattttcttaaataagaataaag |
207 |
Q |
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| T |
5536086 |
gagttgaggatgttaaatatgatttattatttcatagttcaccttttatattaatgttaatggtgaacagtttttaacattttattaaataaaaataaag |
5536185 |
T |
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| Q |
208 |
gttggggttctattttttcggatctagattcgatttttcgggtctgaaaatcagcttcttcctcttttttaccaaacttcttcatcctcttcttcactgt |
307 |
Q |
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| T |
5536186 |
gctggggttcgattttttcgga--------------------tctgaaaatcagcttcttcctcttttttaccaaacttcttcatcctcttcttcactgt |
5536265 |
T |
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| Q |
308 |
ttttgttctgatttgatttgattttcttcatcatcttggtttataggtttgtatagatggaacatttagtttttggcttgattttgtgaatggagaagaa |
407 |
Q |
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| T |
5536266 |
ttttgttctgatttgattttattttcttcatcatcttggtttataggtttgtatagatggaacatttagtttttggcttgattttgtgaatggagaagaa |
5536365 |
T |
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| Q |
408 |
gttagattttctaggtttgagattatgaagattgaagaacttgtttctttttt |
460 |
Q |
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| T |
5536366 |
gttagattttctaggtttgagattatgaagattgaagaacttgtttctttttt |
5536418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 4908194 - 4908137
Alignment:
| Q |
403 |
aagaagttagattttctaggtttgagattatgaagattgaagaacttgtttctttttt |
460 |
Q |
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| T |
4908194 |
aagaagttggattttatgggattgagataatgaagattgaagaacttgtttctttttt |
4908137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 4908258 - 4908222
Alignment:
| Q |
371 |
atttagtttttggcttgattttgtgaatggagaagaa |
407 |
Q |
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| T |
4908258 |
atttagtttttggcttatttttgtgaatggagaagaa |
4908222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 10459974 - 10459933
Alignment:
| Q |
275 |
tttaccaaacttcttcatcctcttcttcactgtttttgttct |
316 |
Q |
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| T |
10459974 |
tttaccaaacttattcatcctgttcttcactgtttttgttct |
10459933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 4486179 - 4486143
Alignment:
| Q |
424 |
ttgagattatgaagattgaagaacttgtttctttttt |
460 |
Q |
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| T |
4486179 |
ttgagataatgaagattgaagaacttgtttctttttt |
4486143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 19737652 - 19737692
Alignment:
| Q |
276 |
ttaccaaacttcttcatcctcttcttcactgtttttgttct |
316 |
Q |
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| T |
19737652 |
ttaccaaacttcttcatcatgttcttcgctgtttttgttct |
19737692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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