View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5837-Insertion-7 (Length: 337)
Name: NF5837-Insertion-7
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5837-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 37403107 - 37403435
Alignment:
| Q |
9 |
aaaactatatccagagaaatacgtaaatttcaatataagaggaggcaatattaattaaataaattgtacctttaagtggaaaatagcctcttttctgaag |
108 |
Q |
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| T |
37403107 |
aaaactatatccagagaaatacgtaaatttcaatataagaggaggcaatattaattaaataaattgtacctttaagtggaaaatagcctcttttctgaag |
37403206 |
T |
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| Q |
109 |
ctcatctaagttaatataccccaacataccacatccactaggagtatataacatgaactcaggaatattgaattcttgtgcaactttcaaagtaaaattc |
208 |
Q |
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| T |
37403207 |
ctcatcaaagttaatataccccaacataccacatccactaggagtatataacatgaactcaggaatattgaattcttgtgcaactttcaaagtaaaattc |
37403306 |
T |
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| Q |
209 |
atcacaccatcagaaactatgcatgtaacaggaggcacatcttcattttctgaagaaacaaactttgctataagatttctgaatgaaatcaacccaccaa |
308 |
Q |
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| T |
37403307 |
atcacaccatcagaaactatgcatgtaacaggaggcacatcttcattttctgaagaaacaaactttgctataagatttctgaatgaaatcaacccaccaa |
37403406 |
T |
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| Q |
309 |
taggcattgcactgcacaaatctggtagg |
337 |
Q |
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| T |
37403407 |
taggcattgcactgcacaaatctggtagg |
37403435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 26676181 - 26676257
Alignment:
| Q |
167 |
tcaggaatattgaattcttgtgcaactttcaaagtaaaattcatcacaccatcagaaactatgcatgtaacaggagg |
243 |
Q |
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| T |
26676181 |
tcagggatattaagttcttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagtaacaggagg |
26676257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 26947789 - 26947865
Alignment:
| Q |
167 |
tcaggaatattgaattcttgtgcaactttcaaagtaaaattcatcacaccatcagaaactatgcatgtaacaggagg |
243 |
Q |
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||||| ||||| | |||||| ||| | | |||||||||| |||| |||||||||||||||||| ||||||||||| |
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| T |
26947789 |
tcagggatattaagttcttgagcagcatccaaagtaaaactcatacaaccatcagaaactatgcaagtaacaggagg |
26947865 |
T |
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