View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5837_high_2 (Length: 593)
Name: NF5837_high_2
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5837_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 136 - 593
Target Start/End: Complemental strand, 2708535 - 2708086
Alignment:
| Q |
136 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactatgcagattctttgtgctgaagactaaatatg |
235 |
Q |
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| T |
2708535 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactgtgcagattctttgtgctgaagactaaatatg |
2708436 |
T |
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| Q |
236 |
ctactctcaaatatggttttatatttatttctaggatttgtttctgaaccaaggctggagatgtgtgctataatggttcagtcaacatgattactttaac |
335 |
Q |
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| T |
2708435 |
ctactctcaaatatggtcttatatttatttctaggatttgtttctgaaccaaggctggagatgtgtgctataatggttcagtcaacatgattactttaac |
2708336 |
T |
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| Q |
336 |
tgaattatgtcatgttgagtcagttgggatagataactgtttctatagggtgttagttagctagctggttattatgtctattagttatgattttatgaac |
435 |
Q |
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| T |
2708335 |
tgaattatgtcatgttgagtcagttgggatagataactgtttctaaagggtgttagttagctagctggttactatgtctattagtt--------atgaac |
2708244 |
T |
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| Q |
436 |
aattgatcaaaactcacgttgaatcacaccattgaaatttcatttgtaatctttaaagagaaaatgaattgatgaacaataaatagttgattagagtgat |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2708243 |
aattgatcaaaactcacgttgaatcacaccattgaaatttcatttgtaatctttaaagagaaaatgaattgatgaacaataaatagttgattagagtgat |
2708144 |
T |
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| Q |
536 |
gaaatctgagagtaccttgctcagagtctaatcaccaagaatatccatgtgtggaatt |
593 |
Q |
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| T |
2708143 |
gaaatctgagagtaccttgctcagagtctaatcaccaagaatatccatgtgtggaatt |
2708086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 2701978 - 2701837
Alignment:
| Q |
12 |
gcaaatatcaaagagctatgcgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaaccca |
111 |
Q |
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|||||||||| ||||||||| |||||| || | |||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
2701978 |
gcaaatatcagagagctatgtgaccaggttctgtctctttcagaatacagagctcagctctatgattatctaaagagtaggatgaataccattgcaccca |
2701879 |
T |
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| Q |
112 |
atttgactgctatgaccggggagcttgttggtgctcgcctca |
153 |
Q |
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| T |
2701878 |
atttgactgctatggttggggagcttgttggtgctcgcctca |
2701837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 26715416 - 26715556
Alignment:
| Q |
13 |
caaatatcaaagagctatgcgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaa |
112 |
Q |
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||||||| | |||||| || || ||| |||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26715416 |
caaatattagagagctctgtgatcaggttttgtctctatcagaatacagagctcaactctatgattatctcaagagtaggatgaacaccattgcacccaa |
26715515 |
T |
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| Q |
113 |
tttgactgctatgaccggggagcttgttggtgctcgcctca |
153 |
Q |
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| T |
26715516 |
tttgactgctatggttggggagcttgttggtgctcgactca |
26715556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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