View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5837_low_1 (Length: 950)

Name: NF5837_low_1
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5837_low_1
NF5837_low_1
[»] chr4 (4 HSPs)
chr4 (18-885)||(53556983-53557843)
chr4 (79-162)||(40253993-40254076)
chr4 (83-163)||(21174544-21174624)
chr4 (903-941)||(53556926-53556965)
[»] chr1 (5 HSPs)
chr1 (727-875)||(4685341-4685489)
chr1 (294-372)||(4685705-4685783)
chr1 (80-162)||(4686089-4686171)
chr1 (80-137)||(4609852-4609909)
chr1 (790-866)||(4612012-4612088)
[»] chr5 (3 HSPs)
chr5 (739-866)||(5113168-5113295)
chr5 (317-420)||(5113496-5113599)
chr5 (98-135)||(2591593-2591630)
[»] chr2 (1 HSPs)
chr2 (735-866)||(40820104-40820235)
[»] chr3 (4 HSPs)
chr3 (91-141)||(20740350-20740400)
chr3 (91-140)||(20732614-20732663)
chr3 (314-372)||(47846787-47846845)
chr3 (800-869)||(47847050-47847119)
[»] chr7 (3 HSPs)
chr7 (745-872)||(41208793-41208920)
chr7 (107-150)||(45675812-45675855)
chr7 (94-141)||(28944890-28944937)
[»] chr6 (1 HSPs)
chr6 (95-130)||(3616988-3617023)


Alignment Details
Target: chr4 (Bit Score: 777; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 18 - 885
Target Start/End: Complemental strand, 53557843 - 53556983
Alignment:
Q  18 ttgtgtccttttggttcatcaagctgttgttgatatttgactgttttcgctttccgagtaatttcttcttcaatcttgtgttccaatagttttttatgtc 117  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557843 ttgtgtccttttggttcatcaagcagttgtttatattcgactgttttcgctttccgagtaatttcttcttcaatcttgtgttccaatagttttttatgtc 53557744  T
Q  118 attgtctgttcttccaggtaactgagcagcaataatggaccacctatagttatatagatgaaattaatttaattagttgagaagaaaggattctaacatg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  53557743 attgtctgttcttccaggtaactgagcagcaataatggaccacctatagttatatagatacaattaatttaattagttgagaagaaaggattctaacatg 53557644  T
Q  218 gtgagattctagtgacaaagaaaaaagacaaacagtagtatgttgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557643 gtgagattctagtgacaaagaaaaaagacaaacagtagtatgttgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaa 53557544  T
Q  318 ggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557543 ggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatct 53557444  T
Q  418 cttgagccctgtgaattttttgtaattatcccattaattagtttgcactaatccaagattactattataatcaaaatagtttcaagtttccatatactac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557443 cttgagccctgtgaattttttgtaattatcccattaattagtttgcactaaaccaagattactattataatcaaaatagtttcaagtttccatatactac 53557344  T
Q  518 aaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaaacccagatgaaaaaagtac 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53557343 aaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaaactcagatgaaaaaagtac 53557244  T
Q  618 aagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacatacatatatataatctaagaagtactagtaattacaaaaattaagnn 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||   ||||||||||||      
T  53557243 aagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacataca----tataatctaagaagtactagta---acaaaaattaagaa 53557151  T
Q  718 nnnnnntatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagacc 817  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557150 aaaaaatatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagacc 53557051  T
Q  818 aaggtcctttcttcacgttagccttgtcacaacatggagctctacccatcttttttgtattgttaaga 885  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  53557050 aaggtcctttcttcacgttagccttgtcacagcatggagctctacccatcttttttgtattattaaga 53556983  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 40253993 - 40254076
Alignment:
Q  79 tttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 162  Q
    ||||||||||||  |||||||||||||||| ||||| ||||| || |||| ||| ||||| || || || ||||||||||||||    
T  40253993 tttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattgcgctgctataatggaccacct 40254076  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 21174624 - 21174544
Alignment:
Q  83 ttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccaccta 163  Q
    ||||||||  |||||||||||||||| || || ||||||||||| || || ||||| ||||| || ||||| |||||||||    
T  21174624 ttcttcaactttgtgttccaatagttcttgatatcattgtctgtcctacctggtaattgagctgctataattgaccaccta 21174544  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 903 - 941
Target Start/End: Complemental strand, 53556965 - 53556926
Alignment:
Q  903 gaaattaggtttaatt-ctctccttgagatgatgatgatg 941  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  53556965 gaaattaggtttaatttctctccttgagatgatgatgatg 53556926  T

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Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 727 - 875
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
Q  727 ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt 826  Q
    |||||||||||||| || ||||||||||| || || ||||| |||| |  ||| ||||||||||||||| ||| ||||||||| |||||||| || ||||    
T  4685489 ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt 4685390  T
Q  827 tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt 875  Q
    |||||||||| || ||||||||||| |||||||||||||| ||| ||||    
T  4685389 tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt 4685341  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 4685783 - 4685705
Alignment:
Q  294 acctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg 372  Q
    ||||||||||||| || ||||||||||||||||| ||||| ||||||||||| |  || ||||||||||||| ||||||    
T  4685783 acctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg 4685705  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 4686171 - 4686089
Alignment:
Q  80 ttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 162  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||||||    
T  4686171 ttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 4686089  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 4609852 - 4609909
Alignment:
Q  80 ttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggta 137  Q
    |||||||||| | ||||||||||||||||||| |  |||||||||||||| |||||||    
T  4609852 ttcttcttcagttttgtgttccaatagtttttcacatcattgtctgttctgccaggta 4609909  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 790 - 866
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
Q  790 ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat 866  Q
    |||||||| |||||||| ||||||||||| |||||| |||| || ||  | ||||||||||| |||||||| |||||    
T  4612012 ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat 4612088  T

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Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 739 - 866
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
Q  739 tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag 838  Q
    ||||| ||||||||||||||||| ||||| ||||||  ||| |||||||| |||||| |||||||||||||||| ||||| || ||||| || || || |    
T  5113295 tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg 5113196  T
Q  839 ccttgtcacaacatggagctctacccat 866  Q
    | |||||||| || |||||||| |||||    
T  5113195 ctttgtcacagcaaggagctcttcccat 5113168  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 420
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
Q  317 aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc 416  Q
    ||||||||||| |||| |||||||||||| |  || ||||||||||| ||||| ||||| |  ||||||||||| ||||| |  || || || |||||||    
T  5113599 aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc 5113500  T
Q  417 tctt 420  Q
    ||||    
T  5113499 tctt 5113496  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 2591630 - 2591593
Alignment:
Q  98 ttccaatagttttttatgtcattgtctgttcttccagg 135  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  2591630 ttccaatagttttttatttcattgtctgttctaccagg 2591593  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 735 - 866
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
Q  735 tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg 834  Q
    |||||||||||||| |||||||||||| ||||||||||   |||| || ||   ||||||  | | ||||||||| || ||||| ||||||||||||||     
T  40820104 tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca 40820203  T
Q  835 ttagccttgtcacaacatggagctctacccat 866  Q
    || || |||||||| || |||||||| |||||    
T  40820204 tttgctttgtcacagcaaggagctcttcccat 40820235  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 20740350 - 20740400
Alignment:
Q  91 tcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactg 141  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  20740350 tcttgtgttccagtagttctttatttcattgtctgttcttccaggtaactg 20740400  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 20732614 - 20732663
Alignment:
Q  91 tcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaact 140  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  20732614 tcttgtgttccagtagttctttatttcattgtctgttcttccaggtaact 20732663  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
Q  314 taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg 372  Q
    |||||||||||||||||||||||||||||||| || || ||||| || ||||| |||||    
T  47846787 taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg 47846845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 800 - 869
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
Q  800 catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt 869  Q
    |||||||||| || ||||||||||||||||||||||| || |||||||| || || || || ||||||||    
T  47847050 catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt 47847119  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 872
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
Q  745 agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt 844  Q
    |||| |||||| |||||||||||||||| | | || |||||    || ||| | |||||||||||||||||||| || |||||||| || ||||| ||||    
T  41208793 agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt 41208892  T
Q  845 cacaacatggagctctacccatcttttt 872  Q
    |||| || |||| ||| ||||| |||||    
T  41208893 cacagcaaggagatcttcccattttttt 41208920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 45675812 - 45675855
Alignment:
Q  107 ttttttatgtcattgtctgttcttccaggtaactgagcagcaat 150  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  45675812 ttttttatctcattgtctgttcttccaggtaactgagctgcaat 45675855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 28944890 - 28944937
Alignment:
Q  94 tgtgttccaatagttttttatgtcattgtctgttcttccaggtaactg 141  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||||||||    
T  28944890 tgtgttccaaaagttctttatctcattgtctgttcttccgggtaactg 28944937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 3617023 - 3616988
Alignment:
Q  95 gtgttccaatagttttttatgtcattgtctgttctt 130  Q
    ||||||||||||||||||||||||||||||||||||    
T  3617023 gtgttccaatagttttttatgtcattgtctgttctt 3616988  T

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