View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5837_low_6 (Length: 378)

Name: NF5837_low_6
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5837_low_6
NF5837_low_6
[»] chr7 (1 HSPs)
chr7 (1-366)||(3087146-3087511)
[»] chr6 (9 HSPs)
chr6 (1-178)||(4299050-4299227)
chr6 (106-174)||(4557956-4558024)
chr6 (3-174)||(4622868-4623039)
chr6 (106-174)||(4586467-4586535)
chr6 (122-168)||(4612957-4613003)
chr6 (125-178)||(4626801-4626854)
chr6 (2-43)||(4255985-4256026)
chr6 (117-174)||(4571814-4571871)
chr6 (116-168)||(4599011-4599063)
[»] chr8 (1 HSPs)
chr8 (106-174)||(16685519-16685587)
[»] scaffold0477 (1 HSPs)
scaffold0477 (125-166)||(3930-3971)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 3087146 - 3087511
Alignment:
Q  1 actctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatcttttcgatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087146 actctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatcttttcgatct 3087245  T
Q  101 tcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc-taaaatctcatctgcttgtcataat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||| |||||| |||||||||||||    
T  3087246 tcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactctggcgtcagaaactctcatatgcttgtcataat 3087345  T
Q  200 tatagaagaagtcaatagcttactaggaatacactctctaacgctttctaacacacnnnnnnnattggttaacatttatgagtctcgtcaaattatgtgg 299  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||       | ||||| |||||||||||| |||| |||||||||||    
T  3087346 tatagaagaagtcaatagcttgctaggaatacactctc-aacgctttctaacacacttttttcactggtttacatttatgagtttcgttaaattatgtgg 3087444  T
Q  300 gactcatgaatgtaaatcagaaagagtgtgttgaaaagtgtttgacaaagagttcgttactaatatt 366  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  3087445 gactcatgaatgttaatcagaaagagtgcgttgaaaagtgtttgacaaagagtttgttactaatatt 3087511  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 4299227 - 4299050
Alignment:
Q  1 actctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatcttttcgatct 100  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||| || |||||  || |||||||| |||||||||  |||  ||| ||| ||| |    
T  4299227 actctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaattctaccatgacatcatttggattt 4299128  T
Q  101 tcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 178  Q
      |  |||||| | |||||  ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  4299127 gtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaa 4299050  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 4557956 - 4558024
Alignment:
Q  106 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 174  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  4557956 ccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtc 4558024  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 4622868 - 4623039
Alignment:
Q  3 tctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgggatcttttcgatcttc 102  Q
    |||||||||||| |||||| ||||| ||||||||||||| |||||| || |  ||  || ||||||||| ||||||||  |||  ||| ||| | |||      
T  4622868 tctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaattctaccatgacatcatttggctctgt 4622967  T
Q  103 aacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 174  Q
    || |||||| | |||||||| |||||| |  |||||||||| |||||| |||| ||||||||||| ||||||    
T  4622968 aatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtc 4623039  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 4586467 - 4586535
Alignment:
Q  106 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 174  Q
    |||||| | |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  4586467 ccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtc 4586535  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 4613003 - 4612957
Alignment:
Q  122 agatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 168  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4613003 agatccttcagtcgaaagttctgcaatccttgaatacagtccacttt 4612957  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 4626801 - 4626854
Alignment:
Q  125 tccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 178  Q
    |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||    
T  4626801 tccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaa 4626854  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 4256026 - 4255985
Alignment:
Q  2 ctctcaagttcatcataagtgttaaagataatagcagaggct 43  Q
    ||||||||||||| |||||||||||| | |||||||||||||    
T  4256026 ctctcaagttcattataagtgttaaaaacaatagcagaggct 4255985  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 4571814 - 4571871
Alignment:
Q  117 caggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 174  Q
    |||||| |||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  4571814 caggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtc 4571871  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 4599011 - 4599063
Alignment:
Q  116 tcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 168  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  4599011 tcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctacttt 4599063  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 16685587 - 16685519
Alignment:
Q  106 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 174  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  16685587 ccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtc 16685519  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 3971 - 3930
Alignment:
Q  125 tccttcagtcgaaagttctgcaatcctggaatacagtctact 166  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctact 3930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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