View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5837_low_7 (Length: 332)
Name: NF5837_low_7
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5837_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 5536279 - 5535986
Alignment:
| Q |
1 |
aaatcagaacaaaaacagtgaagaagaggatgaagaagtttggtaaaaaagaggaagaagctgattttcagacccgaaaaatcgaatctagatccgaaaa |
100 |
Q |
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| T |
5536279 |
aaatcagaacaaaaacagtgaagaagaggatgaagaagtttggtaaaaaagaggaagaagctgattttcaga--------------------tccgaaaa |
5536200 |
T |
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| Q |
101 |
aatagaaccccaacctttatttttatttaagaaaatgttaaaaattgttcaccattaacattaatataaaaggtgaactatgaaataataaatcagattt |
200 |
Q |
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||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5536199 |
aatcgaaccccagcctttatttttatttaataaaatgttaaaaactgttcaccattaacattaatataaaaggtgaactatgaaataataaatcatattt |
5536100 |
T |
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| Q |
201 |
aacatcctcaacttcttttgctctaaggttgcaaacagatgagagtttatgcatgcattttagagtagcaaccaagagagatttatcataaaccattctt |
300 |
Q |
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||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5536099 |
aacatcctcaactccgtttgctctaaggttgcaaacagaggagagtttatgcatgcattttagagtagcaaccaagagagatttatcatcaaccattctt |
5536000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 10459933 - 10459974
Alignment:
| Q |
6 |
agaacaaaaacagtgaagaagaggatgaagaagtttggtaaa |
47 |
Q |
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| T |
10459933 |
agaacaaaaacagtgaagaacaggatgaataagtttggtaaa |
10459974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 19737692 - 19737652
Alignment:
| Q |
6 |
agaacaaaaacagtgaagaagaggatgaagaagtttggtaa |
46 |
Q |
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||||||||||||| |||||| | |||||||||||||||||| |
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| T |
19737692 |
agaacaaaaacagcgaagaacatgatgaagaagtttggtaa |
19737652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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