View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5837_low_8 (Length: 272)

Name: NF5837_low_8
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5837_low_8
NF5837_low_8
[»] chr5 (3 HSPs)
chr5 (9-257)||(5536626-5536875)
chr5 (73-121)||(3309489-3309538)
chr5 (73-118)||(5620872-5620917)
[»] chr4 (7 HSPs)
chr4 (79-170)||(52077108-52077200)
chr4 (111-163)||(29059078-29059130)
chr4 (137-199)||(52938871-52938933)
chr4 (102-200)||(50423245-50423342)
chr4 (73-121)||(43781073-43781122)
chr4 (73-121)||(19860330-19860378)
chr4 (73-124)||(48569406-48569458)
[»] chr7 (4 HSPs)
chr7 (73-171)||(31276927-31277026)
chr7 (67-124)||(47800175-47800233)
chr7 (79-139)||(12918465-12918525)
chr7 (73-121)||(33140294-33140342)
[»] chr6 (3 HSPs)
chr6 (65-121)||(34717234-34717290)
chr6 (72-121)||(28983292-28983341)
chr6 (72-121)||(34717755-34717804)
[»] chr3 (10 HSPs)
chr3 (67-121)||(11442155-11442209)
chr3 (71-121)||(32474462-32474512)
chr3 (73-118)||(21166159-21166204)
chr3 (72-121)||(43521076-43521125)
chr3 (72-121)||(44021285-44021334)
chr3 (72-121)||(50836215-50836264)
chr3 (72-121)||(50839589-50839638)
chr3 (73-121)||(930433-930481)
chr3 (73-121)||(32473761-32473809)
chr3 (86-145)||(49454146-49454206)
[»] chr8 (4 HSPs)
chr8 (72-121)||(14197658-14197707)
chr8 (102-200)||(7943180-7943277)
chr8 (102-200)||(44344860-44344957)
chr8 (73-121)||(31408175-31408223)
[»] chr2 (4 HSPs)
chr2 (73-121)||(16681566-16681614)
chr2 (72-171)||(7075402-7075502)
chr2 (72-175)||(45281544-45281647)
chr2 (72-175)||(45288005-45288108)
[»] chr1 (5 HSPs)
chr1 (96-149)||(37825364-37825416)
chr1 (72-121)||(48594225-48594274)
chr1 (72-121)||(48598836-48598885)
chr1 (73-121)||(28371703-28371751)
chr1 (73-124)||(49420951-49421003)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 5536875 - 5536626
Alignment:
Q  9 tcgaagaatatagggtgcacgagaaattaatagggtggaaaaagtaagagtcttactttttt-caggtgaggtttagcatgggaaagtaagttttttccc 107  Q
    ||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5536875 tcgaacaaaatagggtgcacgagaaattaatagggtgaaaaaagaaagagtcttactttttttcaggtgaggtttagcatgggaaagtaagttttttccc 5536776  T
Q  108 atgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatctaagactggttacctcttagcaactttttgattttat 207  Q
    | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5536775 acgatggaaaagtttatgttacaaccatagatatattattttatttaatcaacggtccagatctaagattggttacctcttagcaactttttgattttat 5536676  T
Q  208 gggtaaataaaaatagagaccccacccttaattaattgtttttatattga 257  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5536675 gggtaaataaaaatagagaccccacccttaattgattgtttttatattga 5536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 3309489 - 3309538
Alignment:
Q  73 ggtgaggtttagcatgggaaa-gtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||| | ||||| ||||| ||||||||||||||    
T  3309489 ggtgaggtttagcatgggaaagggaagttctttcctatgatgggaaagtt 3309538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 5620917 - 5620872
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaa 118  Q
    ||||||||||||||||||||||| | ||||||||||  ||||||||    
T  5620917 ggtgaggtttagcatgggaaagttacttttttcccaccatgggaaa 5620872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 52077108 - 52077200
Alignment:
Q  79 gtttagcatgggaaagta-agttttttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatc 170  Q
    ||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||    
T  52077108 gtttaacatgggaaaggagagttatttcccatgatgggaaagttgatgttacaaccatagatatatcatttaatttattcaacggttcagatc 52077200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 29059130 - 29059078
Alignment:
Q  111 atgggaaagttgatgttacaaccatagatatattattttatttaatcaacggt 163  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  29059130 atgggaaagttgatgttacaaccatagatatatcatttaatttattcaacggt 29059078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 52938933 - 52938871
Alignment:
Q  137 gatatattattttatttaatcaacggtccagatctaagactggttacctcttagcaacttttt 199  Q
    ||||||||||||||||||||||| |||| ||||||| || ||||||||| ||| |||||||||    
T  52938933 gatatattattttatttaatcaatggtctagatctaggattggttacctgttaacaacttttt 52938871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 50423245 - 50423342
Alignment:
Q  102 tttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatctaagactggttacctcttagcaactttttg 200  Q
    |||||||||||||   |||| || ||||| |||| |||||||||||||||||| |||| ||||  ||| ||| |||||||||||  || ||||||||||    
T  50423245 tttcccatgatggtgcagtttattttaca-ccattgatatattattttatttattcaatggtctggatttaaaactggttacctgctaacaactttttg 50423342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 43781122 - 43781073
Alignment:
Q  73 ggtgaggtttagcatggg-aaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||| |||| ||||||||| | ||||||||||||||    
T  43781122 ggtgaggtttagcatgggaaaaggaagtttttttctatgatgggaaagtt 43781073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 19860330 - 19860378
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  19860330 ggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtt 19860378  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 48569406 - 48569458
Alignment:
Q  73 ggtgaggtttagcatgggaaagt-aagttttttcccatgatgggaaagttgat 124  Q
    ||||||||||| ||||| ||||  ||||| |||||||||||||||||||||||    
T  48569406 ggtgaggtttaacatggaaaagggaagttgtttcccatgatgggaaagttgat 48569458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 31276927 - 31277026
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaa-gttttttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatct 171  Q
    |||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||| ||||||| ||||||||||| | || ||| |||||| |||||||    
T  31276927 ggtgagatttagtatgggaaaggaaagttctttcccatgatgggaaagttgatgtttcaaccattgatatattattattttaaatgaacggttcagatct 31277026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 47800233 - 47800175
Alignment:
Q  67 ttttcaggtgaggtttagcatgggaaa-gtaagttttttcccatgatgggaaagttgat 124  Q
    |||||||||||||||||| |||||||| | ||||  || ||||||||||||||||||||    
T  47800233 ttttcaggtgaggtttagtatgggaaagggaagtagttccccatgatgggaaagttgat 47800175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 12918525 - 12918465
Alignment:
Q  79 gtttagcatgggaaagtaagttttttcccatgatgggaaagttgatgttacaaccatagat 139  Q
    |||||| |||||||||||   |||||||||||||||||||||   | ||||||||||||||    
T  12918525 gtttagtatgggaaagtattatttttcccatgatgggaaagtgtcttttacaaccatagat 12918465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 33140342 - 33140294
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||| |||||||||| | ||||||||||  |||||||||||    
T  33140342 ggtgaggtttagtatgggaaagttacttttttcccaccatgggaaagtt 33140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 34717234 - 34717290
Alignment:
Q  65 ttttttcaggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  34717234 ttttttcaggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 34717290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 28983341 - 28983292
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  28983341 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 28983292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 34717804 - 34717755
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  34717804 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 34717755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 11442209 - 11442155
Alignment:
Q  67 ttttcaggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  11442209 ttttcaggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 11442155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 32474512 - 32474462
Alignment:
Q  71 caggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  32474512 caggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 32474462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 21166204 - 21166159
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaa 118  Q
    ||||||||||||||||||||||| | ||||||||||  ||||||||    
T  21166204 ggtgaggtttagcatgggaaagttacttttttcccaccatgggaaa 21166159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 43521076 - 43521125
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  43521076 aggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 43521125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 44021285 - 44021334
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||| ||||||||||||||||| ||||| |||||||  |||||||||||    
T  44021285 aggtggggtttagcatgggaaagaaagttgtttcccaccatgggaaagtt 44021334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 50836215 - 50836264
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  50836215 aggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtt 50836264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 50839638 - 50839589
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  50839638 aggtgaggtttagcatgggaaagctatttttttcccaccatgggaaagtt 50839589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 930481 - 930433
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  930481 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 930433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 32473761 - 32473809
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  32473761 ggtgaggtttagcatgggaaagctacttttttcccactatgggaaagtt 32473809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 49454146 - 49454206
Alignment:
Q  86 atgggaaagt-aagttttttcccatgatgggaaagttgatgttacaaccatagatatatta 145  Q
    |||||||||| |||||||||||||| |||  ||||||||||||  |||||| |||||||||    
T  49454146 atgggaaagtgaagttttttcccatcatgaaaaagttgatgttttaaccattgatatatta 49454206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 14197658 - 14197707
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||||||||||| | ||||||||||  |||||||||||    
T  14197658 aggtgaggtttagcatgggaaagttacttttttcccaccatgggaaagtt 14197707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 7943180 - 7943277
Alignment:
Q  102 tttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatctaagactggttacctcttagcaactttttg 200  Q
    |||||||||||||   |||| || ||||| |||| |||||||||||||||||| |||| ||||  ||| ||| |||||||||||  || ||||||||||    
T  7943180 tttcccatgatggtgcagtttattttaca-ccattgatatattattttatttattcaatggtctggatttaaaactggttacctgctaacaactttttg 7943277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 44344860 - 44344957
Alignment:
Q  102 tttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatctaagactggttacctcttagcaactttttg 200  Q
    |||||||||||||   |||| || ||||| |||| |||||||||||||||||| |||| |||| |||| ||  |||||||||||  || ||||||||||    
T  44344860 tttcccatgatggtgcagtttattttaca-ccattgatatattattttatttattcaatggtctagatttagaactggttacctgctaacaactttttg 44344957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 31408223 - 31408175
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  31408223 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 31408175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 16681566 - 16681614
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||  |||| |||||||| |||||||||||    
T  16681566 ggtgaggtttagcatgggaaagctagttatttcccatcatgggaaagtt 16681614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 7075502 - 7075402
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaa-gttttttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatc 170  Q
    ||||||||||||| |||| |||| || ||| |||   ||||||| |||||||||||| |||| || ||||||||||| | || ||| |||||| ||||||    
T  7075502 aggtgaggtttagtatggaaaaggaaagttcttttatatgatggaaaagttgatgtttcaacgattgatatattattattttaaatgaacggttcagatc 7075403  T
Q  171 t 171  Q
    |    
T  7075402 t 7075402  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 45281544 - 45281647
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaa-gttttttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatc 170  Q
    ||||||||||||  ||||||||| || ||  ||||||||||| ||||||||| | || || ||||||||||||||||||  | | |||| ||| ||||||    
T  45281544 aggtgaggtttaaaatgggaaaggaaagtagtttcccatgataggaaagttgctttt-cagccatagatatattatttttataattcaatggttcagatc 45281642  T
Q  171 taaga 175  Q
    |||||    
T  45281643 taaga 45281647  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 45288005 - 45288108
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaa-gttttttcccatgatgggaaagttgatgttacaaccatagatatattattttatttaatcaacggtccagatc 170  Q
    ||||||||||||  ||||||||| || ||  ||||||||||| ||||||||| | || || ||||||||||||||||||  | | |||| ||| ||||||    
T  45288005 aggtgaggtttaaaatgggaaaggaaagtagtttcccatgataggaaagttgctttt-cagccatagatatattatttttataattcaatggttcagatc 45288103  T
Q  171 taaga 175  Q
    |||||    
T  45288104 taaga 45288108  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 37825416 - 37825364
Alignment:
Q  96 aagttttttcccatgatgggaaagttgatgttacaaccatagatatattatttt 149  Q
    ||||||| ||||||||||||||||||| | || || ||||||||||||||||||    
T  37825416 aagttttatcccatgatgggaaagttg-tttttcagccatagatatattatttt 37825364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 48594274 - 48594225
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||| ||||||  | ||||||||||| |||||||||||    
T  48594274 aggtgaggtttagcattggaaagctacttttttcccatcatgggaaagtt 48594225  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 48598885 - 48598836
Alignment:
Q  72 aggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    |||||||||||||||| ||||||  | ||||||||||| |||||||||||    
T  48598885 aggtgaggtttagcattggaaagctacttttttcccatcatgggaaagtt 48598836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 28371751 - 28371703
Alignment:
Q  73 ggtgaggtttagcatgggaaagtaagttttttcccatgatgggaaagtt 121  Q
    ||||||||||||||||||||||  | ||||||||||  |||||||||||    
T  28371751 ggtgaggtttagcatgggaaagctacttttttcccaccatgggaaagtt 28371703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 49421003 - 49420951
Alignment:
Q  73 ggtgaggtttagcatgggaaagt-aagttttttcccatgatgggaaagttgat 124  Q
    |||||||||||| |||||||||  ||||| ||||||||||||| |||||||||    
T  49421003 ggtgaggtttagtatgggaaagggaagttgtttcccatgatggaaaagttgat 49420951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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