View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5838-Insertion-1 (Length: 1091)
Name: NF5838-Insertion-1
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5838-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 505 - 1033
Target Start/End: Original strand, 12857480 - 12858009
Alignment:
| Q |
505 |
aatgaatggcactctctattagaatgtccggcagcacaagaggtatggcaagaagtggggttgatgacctgtttgcaaccacacttagacagagcagaag |
604 |
Q |
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| T |
12857480 |
aatgaatggcactctcttttagaattccctgcagcacaagaggtatggcaagaagtgggattgatgacctgtttgcaaccacactttgacagagcggaag |
12857579 |
T |
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| Q |
605 |
attttaatgaagcggttttcaacgtgctgtcaaaattgtctcgacaacgtaacatagttgatggccacgactct-ctggagcttatggttgtgaagggac |
703 |
Q |
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| T |
12857580 |
attttcatgaagcggttttcaacgtgctgtgaaaactgtctccgcaacataaca-agttgatggccacgactctccgggagcttatgattgcaaagggac |
12857678 |
T |
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| Q |
704 |
ggtattatttctgagaacacaacctgaagctccttggaagttgcaaggcgtgcagtctcatcaattatggattggtagcaggttcataacataatgcaca |
803 |
Q |
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| T |
12857679 |
aatattatttgagagaacacaacccggagctccttggaagttgcaaggcatgtggccacatcaattgtggattggtagcaagttcataacagaatgcacg |
12857778 |
T |
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| Q |
804 |
taacagtcaccaaccgagcaggccataacatacacagatggaaaaacccagtcgcgggtgcact-aaatgtatcgtgaatgccacattgttttcagaggc |
902 |
Q |
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| T |
12857779 |
tagcagtcaccaaccaagcaggccataacatacgaagatggaaaaaaccagtcgcaagtgcactaaaatgtatcgtcaataccgcactgttttcagaggc |
12857878 |
T |
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| Q |
903 |
taacatatttggttatggtgtgtgcgtgagagatgccacaggtctgtttatacatgcaaatactgcata-tttgacggagtcccttcacctgttgaagtg |
1001 |
Q |
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| T |
12857879 |
taacatctttgggtatggagtgtccgtgagcaatgccacatgtcagtttatacatgcaaataaggcatattttgctggaggcccttcacctgttgaagtg |
12857978 |
T |
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| Q |
1002 |
tatggtcttcttttgcactcttcgttggctga |
1033 |
Q |
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| T |
12857979 |
tatagtc-tcgtttgcactcttcgttggctga |
12858009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 165 - 417
Target Start/End: Original strand, 12857193 - 12857445
Alignment:
| Q |
165 |
aatggcacctaggcgtgctatcaacgatgtctcagaaacgcgacatagacggaaccgaaaattcctctagggcatatgagagatcaacctacttggatgc |
264 |
Q |
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| T |
12857193 |
aatggcacctaggcgtgctgtcaacgatgtctcagaaacgcgacatagacggaaccgaaaattcctctagggcatatgagagatcaacctacttggatgc |
12857292 |
T |
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| Q |
265 |
atagccgtgatggtgtgtatacagtaaaattggcttactattacattatggaacaacttatggataacaccaaatttcaggttcccagcaattggaaatt |
364 |
Q |
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| T |
12857293 |
atagccgtgatggttcatatacagtaaaattggcttaatattacattatggaacaacttataaataacaccaaatttcaggttcccaacaattggaaatt |
12857392 |
T |
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| Q |
365 |
ggtgtggaatttataaactccaaataaagtaaaggttttgctttggagagcgc |
417 |
Q |
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| T |
12857393 |
ggtgtggaatttaaaattttcaaataaagtaaaggttttgctttggagagcgc |
12857445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 12851278 - 12851438
Alignment:
| Q |
9 |
aaaggaaggcttagatggcacattggtgacggtaaagacatcaacgtttggaaggatccatggctctgtaacagtagtagtgcgtgtgtagtttccaatc |
108 |
Q |
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| T |
12851278 |
aaaggaaggcttagatggcacattggtgacggtaaagacatcaacgtttggaaggatccatggctctgtaacagtagtagtgcgtgtgtagtttccaatc |
12851377 |
T |
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| Q |
109 |
ccatcatatgtcacaaagatttaagagcttctcatcttatggtcacactagtggccaatgg |
169 |
Q |
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| T |
12851378 |
ccatcatatgtcacaaagatttaagagcttctcatcttatggtcacactagtggccaatgg |
12851438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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