View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5838-Insertion-2 (Length: 861)
Name: NF5838-Insertion-2
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5838-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 706; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 8 - 861
Target Start/End: Original strand, 50274993 - 50275834
Alignment:
| Q |
8 |
agtttcaagcgtagcactgtcacaacataacatccccttgaatgtgatgatattcacaacatttatcaatacgtcaattattcgcctacacactagttat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50274993 |
agtttcaagcgtagcactgtcacaacataacatccccttgaatgt-------------------atcaatacgtcaattattcgcctacacactagttat |
50275073 |
T |
|
| Q |
108 |
gcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataataaattcagagctcggattcgtgaaatgaaatcatttatgacaagg |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
50275074 |
gcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataatgaattaagagctctgattcgtgaaatgaaatcatttatgacaagg |
50275173 |
T |
|
| Q |
208 |
agagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaataatgctcaaaat |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50275174 |
agagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaataatgctcaaaat |
50275273 |
T |
|
| Q |
308 |
gttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtctggaa |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50275274 |
gttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtgtggaa |
50275373 |
T |
|
| Q |
408 |
agcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaag |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275374 |
agcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaac |
50275473 |
T |
|
| Q |
508 |
cttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtt |
607 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275474 |
cttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtt |
50275573 |
T |
|
| Q |
608 |
tctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttg |
707 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275574 |
tctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttg |
50275673 |
T |
|
| Q |
708 |
tttttagcctct----ataaagtcttgatgtaaccgcttgttcattctaagtatcatttctattttactatct-aacttttctcttatccacggcttcca |
802 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50275674 |
tttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacggcttcca |
50275773 |
T |
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| Q |
803 |
tcaagaattgt-ataatattttcgaacaaaatcaccttgag-agttcggatgaacggaatc |
861 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
50275774 |
tcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatc |
50275834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 8 - 861
Target Start/End: Original strand, 50279017 - 50279858
Alignment:
| Q |
8 |
agtttcaagcgtagcactgtcacaacataacatccccttgaatgtgatgatattcacaacatttatcaatacgtcaattattcgcctacacactagttat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50279017 |
agtttcaagcgtagcactgtcacaacataacatccccttgaatgt-------------------atcaatacgtcaattattcgcctacacactagttat |
50279097 |
T |
|
| Q |
108 |
gcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataataaattcagagctcggattcgtgaaatgaaatcatttatgacaagg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
50279098 |
gcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataatgaattaagagctctgattcgtgaaatgaaatcatttatgacaagg |
50279197 |
T |
|
| Q |
208 |
agagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaataatgctcaaaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50279198 |
agagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaataatgctcaaaat |
50279297 |
T |
|
| Q |
308 |
gttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtctggaa |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50279298 |
gttatcactctcaattaaatgtggaataagataatgttgagtgatcaagattacattgtcttaattaattacctgatgaatgaaagtctccagtgtggaa |
50279397 |
T |
|
| Q |
408 |
agcttggccattgaaagagccatttgacccatatactcagcaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaag |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279398 |
agcttggccattgaaagagccatttgacccatatactcaacaacatttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaac |
50279497 |
T |
|
| Q |
508 |
cttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtt |
607 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279498 |
cttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtt |
50279597 |
T |
|
| Q |
608 |
tctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttg |
707 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279598 |
tctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttg |
50279697 |
T |
|
| Q |
708 |
tttttagcctct----ataaagtcttgatgtaaccgcttgttcattctaagtatcatttctattttactatct-aacttttctcttatccacggcttcca |
802 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50279698 |
tttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaaacttttctcttatccacggcttcca |
50279797 |
T |
|
| Q |
803 |
tcaagaattgt-ataatattttcgaacaaaatcaccttgag-agttcggatgaacggaatc |
861 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
50279798 |
tcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatc |
50279858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 541
Target Start/End: Complemental strand, 22610691 - 22610624
Alignment:
| Q |
474 |
gaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
541 |
Q |
| |
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||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
22610691 |
gaggaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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