View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5838-Insertion-3 (Length: 842)
Name: NF5838-Insertion-3
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5838-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 492 - 839
Target Start/End: Original strand, 38820790 - 38821137
Alignment:
| Q |
492 |
aattggtttagaaaatactaaaatttttagttctttaatttacggtgtaaatgatttaaatttgaaaaacaattgaattactaaaggtacaaatgatata |
591 |
Q |
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| T |
38820790 |
aattggtttagaaaatactaaaatttttagttctttaatttacggtgtaaatgatttaaatttgaaaaacaattgaattactaaaggtacaaatgatata |
38820889 |
T |
|
| Q |
592 |
tttataacaaccaaataggttatgtatcctttttattagtagcgtaaacatgttcttgttactttcattagtctcatctcacttcccataatatcttata |
691 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
38820890 |
tttataacaaccaaataggttatgtatcctttttattagtagcgtaaacatgttcttgttactttcattagtctcttctcacttcccagaatatcttata |
38820989 |
T |
|
| Q |
692 |
caacaatttctcaggtcctattccagtaacaccattcttcaaatcttcaacttctagtttgtatctatagaacctgcatttgttccaaactgttaatcca |
791 |
Q |
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| T |
38820990 |
caacaatttctcaggtcctattccagtaacaccattcttctaatcttcaacttctagtttgtatctatagaacctgcatttgttccaaactgttaatcca |
38821089 |
T |
|
| Q |
792 |
ttaatggtattggatgttctttaaatctgattcaaggttgaaaaagct |
839 |
Q |
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| T |
38821090 |
ttaatggtactggatgttctttaaatctgattcaaggttgaaaaagct |
38821137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 38820340 - 38820692
Alignment:
| Q |
10 |
ctaaatcacagcaatgcagtaagatctttaaaggctttaaaatgatgatgatatgttaat----------------tttcaatttgaaccatttggttag |
93 |
Q |
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| T |
38820340 |
ctaaatcacagcaatgcagtaagatctttaaaggctttaaaatgatgatgatatgttaatgttctggcctattaattttcaatttgaaccatttggttag |
38820439 |
T |
|
| Q |
94 |
aaatgtaatcaagatacatgcgtatgctaaaatactcaaggttacatatgtactctatgaaacagaacaataaaaatatttgggacataaacaaatcact |
193 |
Q |
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| T |
38820440 |
aaatgtaatcaagatacaagcgtatgctaaaatactcaagggtacatatg---------aaacagaacaacaaaaatatttgggacataaacaaatcact |
38820530 |
T |
|
| Q |
194 |
agagtgaaatagcaaactcattaattaacattcaaattcaaattcaaatagtgttacaagtagagcttaagattcacacattgaagctagtactaactat |
293 |
Q |
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| T |
38820531 |
ggagtgaaatagcaaactcattaattaacattc------aaattcaaatagtgttacaagtagagcttaagattcacacattgaagctagtactaactat |
38820624 |
T |
|
| Q |
294 |
ctgactctaaggttacgaaaatgaaaatttgggaattggaattggagtggataataaaactacgccct |
361 |
Q |
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| T |
38820625 |
ctgactctaaggttacgaaaatgaaaatttgggaattggaattggagtggataataaaactacgccct |
38820692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 661 - 826
Target Start/End: Complemental strand, 38800776 - 38800611
Alignment:
| Q |
661 |
agtctcatctcacttcccataatatcttatacaacaatttctcaggtcctattccagtaacaccattcttcaaatcttcaacttctagtttgtatctata |
760 |
Q |
| |
|
|||||||| | ||||||| || ||||| ||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||| ||||| | |
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| T |
38800776 |
agtctcatgtgacttccctgaacatcttctacaacaatttatcaggtcctattccagtaacacgattcttcaaaagtctaacttctagttcatatcttca |
38800677 |
T |
|
| Q |
761 |
gaacctgcatttgttccaaactgttaatccattaatggtattggatgttctttaaatctgattcaa |
826 |
Q |
| |
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||||| ||||||| ||||||| | | |||||| ||| | | ||||| |||||||||||||||| |
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| T |
38800676 |
aaacctacatttgtgccaaactatcactccattgatgctgctacatgttatttaaatctgattcaa |
38800611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 38820690 - 38820738
Alignment:
| Q |
394 |
ccttttacctaaaaacctctcaacgacgagcattaacgccgtctatctg |
442 |
Q |
| |
|
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| T |
38820690 |
ccttttacctaaaaacctctcaacgacgagcattaacgccgtctatctg |
38820738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 38799792 - 38799733
Alignment:
| Q |
229 |
attcaaattcaaatagtgttacaagtagagcttaagattcacacattgaagctagtacta |
288 |
Q |
| |
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| T |
38799792 |
attcaaattcaatttgtgttacaattagagcttttgattcacacatagaagctaatacta |
38799733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 38698325 - 38698390
Alignment:
| Q |
217 |
attaacattcaaattcaaattcaaatagtgttacaagtagagcttaagattcacacattgaagcta |
282 |
Q |
| |
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|
| T |
38698325 |
attaacattaatattcaaattaaaatagtattacaattaaagcttttgattcacacatagaagcta |
38698390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 668 - 750
Target Start/End: Complemental strand, 44015187 - 44015105
Alignment:
| Q |
668 |
tctcacttcccataatatcttatacaacaatttctcaggtcctattccagtaacaccattcttcaaatcttcaacttctagtt |
750 |
Q |
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| T |
44015187 |
tctcacttcactcaatatctcctacaacaacttctcaggtcctattccagtaactccattcttcaaaactctaacttctagtt |
44015105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 42385300 - 42385270
Alignment:
| Q |
377 |
tcttgttattctctcttccttttacctaaaa |
407 |
Q |
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| T |
42385300 |
tcttgttattctctcttccttttacctaaaa |
42385270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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