View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5838-Insertion-5 (Length: 510)

Name: NF5838-Insertion-5
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5838-Insertion-5
NF5838-Insertion-5
[»] chr4 (1 HSPs)
chr4 (9-510)||(43549615-43550116)


Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Complemental strand, 43550116 - 43549615
Alignment:
Q  9 aagcgttttttctagattctttgataattctctcaccatgcgtcggattggtctatcgtttaacgattgatggctccctgtcaccactcgcacaacacct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43550116 aagcgttttttctagattctttgataattctctcaccatgcgtcggattggtctatcgtttaacgattgatggctccctgtcaccactcgcacaacacct 43550017  T
Q  109 cgaagatttttgcagagtatctccaccttctttgctagttcgcgacattcaacttttgatgattttgcttcttctgctaattttatcacttgctctccca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43550016 cgaagatttttgcagagtatctccaccttctttgctagttcgcgacattcaacttttgatgattttgcttcttctgctaattttatcacttgctctccca 43549917  T
Q  209 ttaaaatcggtatcaacagctcttcttcaaggctcttttcctcttccagtttagggatagggttaggacttttcatcattcaacactagctaaccacttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43549916 ttaaaatcggtatcaacagctcttcttcaaggctcttttcctcttccagtttagggctagggttaggacttttcatcattcaacactagctaaccacttt 43549817  T
Q  309 actttctttcttatacttcaaaaactgaagctggaaaactgaaaactgatactgcagagatatatatgaattaaa-tttattgtttaaaagatnnnnnnn 407  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||           
T  43549816 actttctttcttatacttcaaaaactgaagctgggaaactgaaaactgatactgcagagatatatatgaattaaattttattgtttaaaagat-aaaaaa 43549718  T
Q  408 catgaaattaagaaagaagatgatggtattagtgtattacctcgtactattgtgtatgaacttgaagatgatcttggtgattgtttgtcactctttcctt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43549717 catgaaattaagaaagaagatgatggtattagtgtattacctcgtactattgtgtatgaacttgaagatgatcttggtgattgtttgtcactctttcctt 43549618  T
Q  508 tgc 510  Q
    |||    
T  43549617 tgc 43549615  T

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